| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774409
Identifier: 119774409
GI number: 119774409
Start: 1560147
End: 1560584
Strand: Reverse
Name: 119774409
Synonym: Sama_1272
Alternate gene names: NA
Gene position: 1560584-1560147 (Counterclockwise)
Preceding gene: 119774410
Following gene: 119774408
Centisome position: 36.24
GC content: 54.79
Gene sequence:
>438_bases ATGAGAGTATGTGGCGTAGAGCTGAAAGGTGCAGAGGCCATTATCAGCCTGGTGGGCTACGATAAAGAAGCCTTCAACGT GCCCGAGTGTCGCAAGCACTCGTTTGTGGTGAACGATGCCGATAATCAGGAAGCCATCCGTGAATTCCACTTCGCCTTTG CCAAGCTGATGGCCGACTATAAGGTGGAACACATCATCATCGTCGAGCGTGAGCAAAAAGGTAAACTGGCTGGCAGTGCC ATCGGCTTTAAACTGGAAGCCGCTATCCAGCTGGGTGAGTTGCCAGTGACCCTGCTCAAGCCCACGGTTATCCGCGAGCT GTGCAAGCGCAATCCCCCACAGGTAGATTACGACGTGCTTGGGCTCAAGCGCTTCCAGCTGCCGGCCTTTGAAGCTGGCT ATGCCTTCCTGAACGGCCGCATTTACGGCAAGCTGTGA
Upstream 100 bases:
>100_bases ATGAGCTGGGCGAAGACTGAGATACTCAGATCAAGGCGCACGTTTTCGCTCGAGCGAAAGCACCGAACCAATTAAGTGAC AGAAAAGATAAGGGAAAAAA
Downstream 100 bases:
>100_bases GCCAATACCTGGCCCATTACCCCGAGCAGGTGCGCACTCAGGTGGCCGCCCTGCTCGAGGCTGGCACCCTGGGCAATGTG CTCGCCCGTCGCTACCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MRVCGVELKGAEAIISLVGYDKEAFNVPECRKHSFVVNDADNQEAIREFHFAFAKLMADYKVEHIIIVEREQKGKLAGSA IGFKLEAAIQLGELPVTLLKPTVIRELCKRNPPQVDYDVLGLKRFQLPAFEAGYAFLNGRIYGKL
Sequences:
>Translated_145_residues MRVCGVELKGAEAIISLVGYDKEAFNVPECRKHSFVVNDADNQEAIREFHFAFAKLMADYKVEHIIIVEREQKGKLAGSA IGFKLEAAIQLGELPVTLLKPTVIRELCKRNPPQVDYDVLGLKRFQLPAFEAGYAFLNGRIYGKL >Mature_145_residues MRVCGVELKGAEAIISLVGYDKEAFNVPECRKHSFVVNDADNQEAIREFHFAFAKLMADYKVEHIIIVEREQKGKLAGSA IGFKLEAAIQLGELPVTLLKPTVIRELCKRNPPQVDYDVLGLKRFQLPAFEAGYAFLNGRIYGKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16268; Mature: 16268
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVCGVELKGAEAIISLVGYDKEAFNVPECRKHSFVVNDADNQEAIREFHFAFAKLMADY CCEECCEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC KVEHIIIVEREQKGKLAGSAIGFKLEAAIQLGELPVTLLKPTVIRELCKRNPPQVDYDVL CEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCHHHCCHHHHHHHHHCCCCCCCHHHC GLKRFQLPAFEAGYAFLNGRIYGKL CEEEECCCCCCCCEEEECCEEEECC >Mature Secondary Structure MRVCGVELKGAEAIISLVGYDKEAFNVPECRKHSFVVNDADNQEAIREFHFAFAKLMADY CCEECCEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC KVEHIIIVEREQKGKLAGSAIGFKLEAAIQLGELPVTLLKPTVIRELCKRNPPQVDYDVL CEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCHHHCCHHHHHHHHHCCCCCCCHHHC GLKRFQLPAFEAGYAFLNGRIYGKL CEEEECCCCCCCCEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA