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The map label for this gene is sapB [H]

Identifier: 119774371

GI number: 119774371

Start: 1518230

End: 1519261

Strand: Reverse

Name: sapB [H]

Synonym: Sama_1234

Alternate gene names: 119774371

Gene position: 1519261-1518230 (Counterclockwise)

Preceding gene: 119774372

Following gene: 119774370

Centisome position: 35.28

GC content: 52.71

Gene sequence:

>1032_bases
ATGGGTATTTACCTTATCCGCAGACTGAACCTCTTTATCGCGACCTCCATATTGATGGTGAGCATTCTGTTTCTGGCAAC
CAGCCAGTTTCCAACGGACAGGGTGTATGCCCTGACAGGCATCGACAATCCCTCCGGCGAACAGGCGCTGCAGATTATCG
AAGATTATCAGTTGGATAAATCGGAGTTCCGCCAATATATCGCCTATGTTCAGCAGCGGCTTACCGGCAACCTGGGCATT
TCCACCACCTCTCAACAAAGTGTGGCAAAAGAGCTGGCCACTGTGCTGCCGACATCTTTTGAGCTGGCGTGTTTTTCAGG
CTTGCTGGCGCTGCTCCTTGGGATCCCACTCGGGGTTTTGGCCTCCCTTAACCAACATAAATTGACTCAACATGCCATCA
TGGCCATTACCCTCACCGGCTACTCCGTGCCTGTGTTCTGGCTTGGCTTATCCTTGTCGCTGTGGTTTGGCGTGCGTCTG
GGATGGCTACCCATCTCAGGCCAGATTAACCTGCTTTACGAAATCAAACCCGTCACTGGCTTTATGCTGATAGACACCCT
GCTGTCAGATTCAAGCTACCGTATTTCAGCATTCAAGGATGCGCTGGCGCACATTGTCTTGCCGGCAGTCACTCTGGCGG
TATTGCCCTTTACCGTGGTGGTGCGTATTACCCGCGCTGCCATGGTCAACGTGATGAATCAAACCTATATCCGTGCCGCC
GAGGCACGTGGGCTGCACACGGGCATGATCATCCTGAAACATGCGCTCCCCAATGCCCTCATCCCGGTGCTGAAACACCT
AGGCCTGATGCTCGGAGCATTCGCCAGTTATGCCATTGTGGTGGAAGTTATTTTCTCCTGGCCCGGAGTGGGCTCCTGGC
TGGTGTCAGGTATCTATCAGCGTGATTACACCGTCATTCAGGGCGGAATTCTGGCGGTTGCCCTGCTCATTATTTTCCTG
AGCATCCTGATTGAAGTGATACACACAGCCTCCAACCCGCTGAGCAGGAAAGAACTTTATGCCTCAAATTAA

Upstream 100 bases:

>100_bases
GCTCGCTGGTGCACCGCAACAATATTCAGCATATGCCGGTAACGCCCTTTGGCGGTATTGCCTTCGCCGACATCCAGCCT
GCAACGGAGGAGAAGAACTG

Downstream 100 bases:

>100_bases
GATTTATCAGGAAGACGACATTCCGTCTCCCATGAGGCGGCTATGGCAGGCGTTTGCATCCAACCCCTTCGCCCTGGCGG
GGCTTTGGGTCATCATCGGG

Product: peptide ABC transporter permease

Products: ADP; phosphate; peptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MGIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDKSEFRQYIAYVQQRLTGNLGI
STTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVLASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRL
GWLPISGQINLLYEIKPVTGFMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAA
EARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQRDYTVIQGGILAVALLIIFL
SILIEVIHTASNPLSRKELYASN

Sequences:

>Translated_343_residues
MGIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDKSEFRQYIAYVQQRLTGNLGI
STTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVLASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRL
GWLPISGQINLLYEIKPVTGFMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAA
EARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQRDYTVIQGGILAVALLIIFL
SILIEVIHTASNPLSRKELYASN
>Mature_342_residues
GIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDKSEFRQYIAYVQQRLTGNLGIS
TTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVLASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRLG
WLPISGQINLLYEIKPVTGFMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAAE
ARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQRDYTVIQGGILAVALLIIFLS
ILIEVIHTASNPLSRKELYASN

Specific function: Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=40.2135231316726, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=37.5739644970414, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=30.6547619047619, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787761, Length=288, Percent_Identity=37.8472222222222, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=28.7833827893175, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=28.1437125748503, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=23.5924932975871, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37575; Mature: 37444

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
SEFRQYIAYVQQRLTGNLGISTTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
ASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRLGWLPISGQINLLYEIKPVTG
HCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCHHH
FMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQ
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDYTVIQGGILAVALLIIFLSILIEVIHTASNPLSRKELYASN
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
>Mature Secondary Structure 
GIYLIRRLNLFIATSILMVSILFLATSQFPTDRVYALTGIDNPSGEQALQIIEDYQLDK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
SEFRQYIAYVQQRLTGNLGISTTSQQSVAKELATVLPTSFELACFSGLLALLLGIPLGVL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
ASLNQHKLTQHAIMAITLTGYSVPVFWLGLSLSLWFGVRLGWLPISGQINLLYEIKPVTG
HCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCHHH
FMLIDTLLSDSSYRISAFKDALAHIVLPAVTLAVLPFTVVVRITRAAMVNVMNQTYIRAA
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARGLHTGMIILKHALPNALIPVLKHLGLMLGAFASYAIVVEVIFSWPGVGSWLVSGIYQ
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RDYTVIQGGILAVALLIIFLSILIEVIHTASNPLSRKELYASN
CCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; peptides [Periplasm]; H2O [C]

Specific reaction: ATP + peptides [Periplasm] + H2O = ADP + phosphate + peptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]