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The map label for this gene is yddV [C]

Identifier: 119774299

GI number: 119774299

Start: 1417989

End: 1419302

Strand: Reverse

Name: yddV [C]

Synonym: Sama_1162

Alternate gene names: 119774299

Gene position: 1419302-1417989 (Counterclockwise)

Preceding gene: 119774300

Following gene: 119774298

Centisome position: 32.96

GC content: 55.25

Gene sequence:

>1314_bases
GTGAACAAGGATGAACAGCTTGCCCAAATCCCCTCATCAAAACCCTTACCAGCCATGCGCAGGCGCTTGTGGCAAAGTTT
TATGTGTATTGCCCTGCTTGGGATACTTACAGGAATAGTTGCCCTCAGCGCCATCCATCAGCAGGCCAGCGAATTTACCC
AAAGCCAGCAGAGTCTTGCCCACTCACGTTATCTGGTGCGCGATGCCTTGATGCAACAGTTGGGGCTTGAAAATCTTGGC
CGCGACTGGCACTCGCTGCCCCTTTCCTCCCGGTCGCAATTGATTGGCGAAATGCGCGCCCGGCAGCAGGGACTGGTCAG
TGCCCTCTCCAATACCCCCGGCACAGAGCGCGATATGGCCATTCGGGTAATGCAGGGGCTTACGAGCGTGCAACCAGAGG
CGCAAAACACTCCCGTTATCGGTGGGCTCGCAGAACTCAGTCGGGATTTGGCCATCAGAGTCAGCTCTCTGGATGTGGGC
AAGGCACAGCAAGTGCTGACGGACATAGAGCAACGTCGCTGGCAGTTGACCATGACAGTGATGTTTTTATCACTGCTGTG
TATCCTGCTGACTCAATTTTTGGCGTGGCATCTGCTGGGCAGGCACTTTATTCGCCCTCTGATAGAGCTTGGCAGGCAGA
TAGATAACCTCTCGGCGCATCGCAAAGACAACACGGCCACGGTTGAACCAGCCAATCAGGAAGTAAAAGACATCTCAGAG
AACCTGCGCCATATCCATCACCAGTTACAACATCAGCAACACAACCCGAATGTGGACCAGAGCACTGGGCTCGCGTCACG
CAGTGCACTGAATCATCATTTGCAGCAGGAATGGTTGCGGGGCTTAAGACGCAATGAATCTGTGTCCATGTTGTTGCTGA
GTGCCGATCCCGTGATGCTGCAAAACGGCCATGAACTGGCCGAGCTGCCGCCCAACAGCCTGACACAACTGGTGAGTATC
GCGGTCGAACACACAGCAAGGGCACAGGATTATCTGGCTCATTACGAAGGCGATAAACTCGCCATTGTGCTGTCCTGTAC
CGACCTTGAGCAGGCCATAAAACTTGCCCACCAGCTTTGTTATCGCGTTCATCAAACGCACATCCCCACGCCCATGCTGG
CGACCCATCCCTGGGTCACTGTGTCAGTGGGCGTCGCTTCCCGCATCCCCCGCAGCACACATGGCTGGGATATATTGCTG
CAGGAAGCGGAGGAAGCGCTGCTGCAGGCAAGGGTTCAGGGGGGAAATCAGGCCCTGGTTGCCCCCTGTCTTTTACCCGA
CAGCAGTTGGCTGGCCAATGAGGCAATTTATTGA

Upstream 100 bases:

>100_bases
GTGACAAGGGACGTTGCGCCCTACAGCATAGTCGCAGGCAATCCCGCCAGACCAATTGGCGACAGGCGCGACAAAAGGTG
AACTAACCAAGGATGACGCA

Downstream 100 bases:

>100_bases
GGTAATATCGGCGTCAAACTCACGTCTGGTCAGGGTTTTTGCTGCATGCTGAGCGTGACAACACAGATGCAGGTGATACA
ATGCAGGCCATTCTTTTCAA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Response Regulator Receiver Domain-Containing Protein; GGDEF Domain-Containing Protein; Two Component Response Regulator Protein; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; Response Regulator Receiver Protein; PasGgdef

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MNKDEQLAQIPSSKPLPAMRRRLWQSFMCIALLGILTGIVALSAIHQQASEFTQSQQSLAHSRYLVRDALMQQLGLENLG
RDWHSLPLSSRSQLIGEMRARQQGLVSALSNTPGTERDMAIRVMQGLTSVQPEAQNTPVIGGLAELSRDLAIRVSSLDVG
KAQQVLTDIEQRRWQLTMTVMFLSLLCILLTQFLAWHLLGRHFIRPLIELGRQIDNLSAHRKDNTATVEPANQEVKDISE
NLRHIHHQLQHQQHNPNVDQSTGLASRSALNHHLQQEWLRGLRRNESVSMLLLSADPVMLQNGHELAELPPNSLTQLVSI
AVEHTARAQDYLAHYEGDKLAIVLSCTDLEQAIKLAHQLCYRVHQTHIPTPMLATHPWVTVSVGVASRIPRSTHGWDILL
QEAEEALLQARVQGGNQALVAPCLLPDSSWLANEAIY

Sequences:

>Translated_437_residues
MNKDEQLAQIPSSKPLPAMRRRLWQSFMCIALLGILTGIVALSAIHQQASEFTQSQQSLAHSRYLVRDALMQQLGLENLG
RDWHSLPLSSRSQLIGEMRARQQGLVSALSNTPGTERDMAIRVMQGLTSVQPEAQNTPVIGGLAELSRDLAIRVSSLDVG
KAQQVLTDIEQRRWQLTMTVMFLSLLCILLTQFLAWHLLGRHFIRPLIELGRQIDNLSAHRKDNTATVEPANQEVKDISE
NLRHIHHQLQHQQHNPNVDQSTGLASRSALNHHLQQEWLRGLRRNESVSMLLLSADPVMLQNGHELAELPPNSLTQLVSI
AVEHTARAQDYLAHYEGDKLAIVLSCTDLEQAIKLAHQLCYRVHQTHIPTPMLATHPWVTVSVGVASRIPRSTHGWDILL
QEAEEALLQARVQGGNQALVAPCLLPDSSWLANEAIY
>Mature_437_residues
MNKDEQLAQIPSSKPLPAMRRRLWQSFMCIALLGILTGIVALSAIHQQASEFTQSQQSLAHSRYLVRDALMQQLGLENLG
RDWHSLPLSSRSQLIGEMRARQQGLVSALSNTPGTERDMAIRVMQGLTSVQPEAQNTPVIGGLAELSRDLAIRVSSLDVG
KAQQVLTDIEQRRWQLTMTVMFLSLLCILLTQFLAWHLLGRHFIRPLIELGRQIDNLSAHRKDNTATVEPANQEVKDISE
NLRHIHHQLQHQQHNPNVDQSTGLASRSALNHHLQQEWLRGLRRNESVSMLLLSADPVMLQNGHELAELPPNSLTQLVSI
AVEHTARAQDYLAHYEGDKLAIVLSCTDLEQAIKLAHQLCYRVHQTHIPTPMLATHPWVTVSVGVASRIPRSTHGWDILL
QEAEEALLQARVQGGNQALVAPCLLPDSSWLANEAIY

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48870; Mature: 48870

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDEQLAQIPSSKPLPAMRRRLWQSFMCIALLGILTGIVALSAIHQQASEFTQSQQSLA
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSRYLVRDALMQQLGLENLGRDWHSLPLSSRSQLIGEMRARQQGLVSALSNTPGTERDMA
HHHHHHHHHHHHHHCHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IRVMQGLTSVQPEAQNTPVIGGLAELSRDLAIRVSSLDVGKAQQVLTDIEQRRWQLTMTV
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHH
MFLSLLCILLTQFLAWHLLGRHFIRPLIELGRQIDNLSAHRKDNTATVEPANQEVKDISE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
NLRHIHHQLQHQQHNPNVDQSTGLASRSALNHHLQQEWLRGLRRNESVSMLLLSADPVML
HHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
QNGHELAELPPNSLTQLVSIAVEHTARAQDYLAHYEGDKLAIVLSCTDLEQAIKLAHQLC
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHH
YRVHQTHIPTPMLATHPWVTVSVGVASRIPRSTHGWDILLQEAEEALLQARVQGGNQALV
HHHHHHCCCCCCCCCCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
APCLLPDSSWLANEAIY
EEEECCCCHHHHHCCCC
>Mature Secondary Structure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EEEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA