Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774264

Identifier: 119774264

GI number: 119774264

Start: 1375942

End: 1376256

Strand: Direct

Name: 119774264

Synonym: Sama_1127

Alternate gene names: NA

Gene position: 1375942-1376256 (Clockwise)

Preceding gene: 119774263

Following gene: 119774267

Centisome position: 31.95

GC content: 46.98

Gene sequence:

>315_bases
ATGAAGCCTGAGTTTCACAGTTTCAGCGAGTTTTACCCCTATTATCTCAGTGAGCACACCCATCCGCTTTGCCGCGCATT
ACACTACCTGGGATCATCCTTGGTGCTGTTACTTCTGCTTATTCTGTTGATTTCAGGTGAGTGGCAGTGGGCCTGGTTAT
TGCCGGTAGTGGGGTATGGGTTTGCCTGGATAGGGCATTTTTTTATTGAAAAAAACCGTCCTGCGACATTTCGTTATCCC
TGGTACAGCTTTCTGGGTGATTGGGTAATGCTGTGGGATTTTATTTCCGGCAAAAAACGCCACAGATGTGACTGA

Upstream 100 bases:

>100_bases
TTGCATAAGCACCTTTTCCAATCCAATGGTTTTGAAAGCCTAGGCCCCATCCACTTTGATAAAGTTGAAGGTGAGCTGAT
GTTTTATCGCAGGCCATCCA

Downstream 100 bases:

>100_bases
TACAGATCTCTATTGTCCGTGTGAGACATATCTCACACGCGGCGTAGGACAAAATGGCTAAATCTCTCCAATATAGACTA
CCAACCCGGGCTTGTTTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MKPEFHSFSEFYPYYLSEHTHPLCRALHYLGSSLVLLLLLILLISGEWQWAWLLPVVGYGFAWIGHFFIEKNRPATFRYP
WYSFLGDWVMLWDFISGKKRHRCD

Sequences:

>Translated_104_residues
MKPEFHSFSEFYPYYLSEHTHPLCRALHYLGSSLVLLLLLILLISGEWQWAWLLPVVGYGFAWIGHFFIEKNRPATFRYP
WYSFLGDWVMLWDFISGKKRHRCD
>Mature_104_residues
MKPEFHSFSEFYPYYLSEHTHPLCRALHYLGSSLVLLLLLILLISGEWQWAWLLPVVGYGFAWIGHFFIEKNRPATFRYP
WYSFLGDWVMLWDFISGKKRHRCD

Specific function: Unknown

COG id: COG4323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12545; Mature: 12545

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPEFHSFSEFYPYYLSEHTHPLCRALHYLGSSLVLLLLLILLISGEWQWAWLLPVVGYG
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FAWIGHFFIEKNRPATFRYPWYSFLGDWVMLWDFISGKKRHRCD
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKPEFHSFSEFYPYYLSEHTHPLCRALHYLGSSLVLLLLLILLISGEWQWAWLLPVVGYG
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FAWIGHFFIEKNRPATFRYPWYSFLGDWVMLWDFISGKKRHRCD
HHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA