| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774225
Identifier: 119774225
GI number: 119774225
Start: 1315666
End: 1316295
Strand: Reverse
Name: 119774225
Synonym: Sama_1088
Alternate gene names: NA
Gene position: 1316295-1315666 (Counterclockwise)
Preceding gene: 119774227
Following gene: 119774224
Centisome position: 30.57
GC content: 57.62
Gene sequence:
>630_bases ATGAAAATCCTCGAGCTTGCCCCTAGCCCCAGCGCCCGCCGCGTCGGCATTTTTTTGGCAGAACTCGGCATAGAGGTGCC AAGAGAGCAGCTGAATTTAAGGGACGGCGACAACCTGACCCCTGAATTTAAACGTAAAAGCGTTAATGGCCGCATCCCCG TACTGGAGCTGGATGATGGCACCCATATCTGTGAATCTGTCGCCATCTGCCGCTATTTTGATGCCCTGCATCCGCGCGAC AGCAGCCTGTTTGGTAACAGCCCGCTGGAGCAGGCACAGGTGGAAATGTGGAACCGGGTGCTGGAACTGAATGGCCTGAT GGTCGCGTTTCAGGCGTTTCGTAACCTCACCGGCTTTTTCAAAGACCGCGAGCGCTTTGTCGAGGCTTGGGGCGCGGAAT CCCGTGAGCGCATCATAGAATTTCTGCCAACTCTGGAAGCACGCCTCGAAGGGCGTGACTTTGTTGCCATCGAACGCTTC ACCATCGCCGATATCACAGGTTTTGTGCTGATTGGCTTCCTGCCGCGGCTCGAGATTGAACTGACCGACGCCATGCCCAA CATTCGCCGCTGGCACGCAGCCATCGCCGCACGTCCCGCCGTGGCCACCCTGCTGGCAAGCCAGCAATAG
Upstream 100 bases:
>100_bases TCGCAAAAGTGAATATTAACTCTCGATCTAATTATTGACCGTTCGTTCAGTTATGCAGTAGATTCTATCCTAACCGATCG TTCAGATAAAGAGAGGCCTT
Downstream 100 bases:
>100_bases AGGAGTACATCATGATTGAGCTTTATACCGCCGCGACCCCCAACGGCCATAAAATTTCCATTGCCCTTGAAGAATTAGGG CTCGAGTATCGGGTACATGC
Product: glutathione S-transferase family protein
Products: NA
Alternate protein names: Glutathione S-Transferase Domain-Containing Protein; Glutathione S-Transferase Family Protein; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase N-Terminal Domain Protein; Glutathione Transferase; Glutathione S-Transferase C-Terminal Domain; Glutathione S-Transferase Domain; Glutathione-S-Transferase; Glutathione S-Transferase N-Terminal Domain; Glutathione-S Transferase; Glutathione S-Transferase Protein; Glutathionine S-Transferase; Glutathione S-Transferase C-Terminal Domain Protein; Glutathione S-Transferase II
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MKILELAPSPSARRVGIFLAELGIEVPREQLNLRDGDNLTPEFKRKSVNGRIPVLELDDGTHICESVAICRYFDALHPRD SSLFGNSPLEQAQVEMWNRVLELNGLMVAFQAFRNLTGFFKDRERFVEAWGAESRERIIEFLPTLEARLEGRDFVAIERF TIADITGFVLIGFLPRLEIELTDAMPNIRRWHAAIAARPAVATLLASQQ
Sequences:
>Translated_209_residues MKILELAPSPSARRVGIFLAELGIEVPREQLNLRDGDNLTPEFKRKSVNGRIPVLELDDGTHICESVAICRYFDALHPRD SSLFGNSPLEQAQVEMWNRVLELNGLMVAFQAFRNLTGFFKDRERFVEAWGAESRERIIEFLPTLEARLEGRDFVAIERF TIADITGFVLIGFLPRLEIELTDAMPNIRRWHAAIAARPAVATLLASQQ >Mature_209_residues MKILELAPSPSARRVGIFLAELGIEVPREQLNLRDGDNLTPEFKRKSVNGRIPVLELDDGTHICESVAICRYFDALHPRD SSLFGNSPLEQAQVEMWNRVLELNGLMVAFQAFRNLTGFFKDRERFVEAWGAESRERIIEFLPTLEARLEGRDFVAIERF TIADITGFVLIGFLPRLEIELTDAMPNIRRWHAAIAARPAVATLLASQQ
Specific function: Unknown
COG id: COG0625
COG function: function code O; Glutathione S-transferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4503481, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322968, Length=209, Percent_Identity=33.0143540669856, Blast_Score=99, Evalue=4e-22, Organism=Drosophila melanogaster, GI17864594, Length=188, Percent_Identity=29.2553191489362, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI17933730, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI20130115, Length=200, Percent_Identity=32.5, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI24654992, Length=194, Percent_Identity=29.3814432989691, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23705; Mature: 23705
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILELAPSPSARRVGIFLAELGIEVPREQLNLRDGDNLTPEFKRKSVNGRIPVLELDDG CCEEECCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCC THICESVAICRYFDALHPRDSSLFGNSPLEQAQVEMWNRVLELNGLMVAFQAFRNLTGFF HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRERFVEAWGAESRERIIEFLPTLEARLEGRDFVAIERFTIADITGFVLIGFLPRLEIE HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEE LTDAMPNIRRWHAAIAARPAVATLLASQQ ECCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKILELAPSPSARRVGIFLAELGIEVPREQLNLRDGDNLTPEFKRKSVNGRIPVLELDDG CCEEECCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCC THICESVAICRYFDALHPRDSSLFGNSPLEQAQVEMWNRVLELNGLMVAFQAFRNLTGFF HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRERFVEAWGAESRERIIEFLPTLEARLEGRDFVAIERFTIADITGFVLIGFLPRLEIE HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEE LTDAMPNIRRWHAAIAARPAVATLLASQQ ECCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA