| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774222
Identifier: 119774222
GI number: 119774222
Start: 1313171
End: 1313332
Strand: Reverse
Name: 119774222
Synonym: Sama_1085
Alternate gene names: NA
Gene position: 1313332-1313171 (Counterclockwise)
Preceding gene: 119774223
Following gene: 119774220
Centisome position: 30.5
GC content: 49.38
Gene sequence:
>162_bases ATGTCACACTCCTACGAATTTGAAGACGAAGACTCGCCATGGGGCGATAACGTCAAAGGGAAGCAAAAGAATAAGCGGGT CAAACAGCGTAGACGCGATACCAAGCGCCGCTACTTTGATGAAAATGCCGAGGTGGAATATCTCCAAAGCAAGTGGCGCT GA
Upstream 100 bases:
>100_bases TTTCACCATAAAACAATAAATTTTTCGCTTTAGCTTGGCATGACCATTGGGTAAAAAGATCCTGTGCCAGAGTGGCACAA GTGTTCAGCTGGAAAAGGTC
Downstream 100 bases:
>100_bases AGCTCCCAAATCGAATCCTCTCAGGCAAGCCGTTTGGCTTGCCTTTTTCTTTCCCTGCGCCCGGTAAACGCCGTTTTCGA ATCGAGGTGGATATCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 53; Mature: 52
Protein sequence:
>53_residues MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR
Sequences:
>Translated_53_residues MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR >Mature_52_residues SHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6652; Mature: 6521
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC >Mature Secondary Structure SHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA