Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774222

Identifier: 119774222

GI number: 119774222

Start: 1313171

End: 1313332

Strand: Reverse

Name: 119774222

Synonym: Sama_1085

Alternate gene names: NA

Gene position: 1313332-1313171 (Counterclockwise)

Preceding gene: 119774223

Following gene: 119774220

Centisome position: 30.5

GC content: 49.38

Gene sequence:

>162_bases
ATGTCACACTCCTACGAATTTGAAGACGAAGACTCGCCATGGGGCGATAACGTCAAAGGGAAGCAAAAGAATAAGCGGGT
CAAACAGCGTAGACGCGATACCAAGCGCCGCTACTTTGATGAAAATGCCGAGGTGGAATATCTCCAAAGCAAGTGGCGCT
GA

Upstream 100 bases:

>100_bases
TTTCACCATAAAACAATAAATTTTTCGCTTTAGCTTGGCATGACCATTGGGTAAAAAGATCCTGTGCCAGAGTGGCACAA
GTGTTCAGCTGGAAAAGGTC

Downstream 100 bases:

>100_bases
AGCTCCCAAATCGAATCCTCTCAGGCAAGCCGTTTGGCTTGCCTTTTTCTTTCCCTGCGCCCGGTAAACGCCGTTTTCGA
ATCGAGGTGGATATCGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 53; Mature: 52

Protein sequence:

>53_residues
MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR

Sequences:

>Translated_53_residues
MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR
>Mature_52_residues
SHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6652; Mature: 6521

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure 
SHSYEFEDEDSPWGDNVKGKQKNKRVKQRRRDTKRRYFDENAEVEYLQSKWR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA