| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774196
Identifier: 119774196
GI number: 119774196
Start: 1283094
End: 1283510
Strand: Direct
Name: 119774196
Synonym: Sama_1059
Alternate gene names: NA
Gene position: 1283094-1283510 (Clockwise)
Preceding gene: 119774195
Following gene: 119774197
Centisome position: 29.8
GC content: 58.03
Gene sequence:
>417_bases ATGCGCGCTGTCCTGACCCTGACACTCTGCGCAGGACTGACGGCGTGCGCCAGCAGCGTTGACGACGCCAATCAGTGCGG CTGGGTCTCTGGCTATCAGGACCCGCCGGAGACAGAGCGTCTCTATCGGGCGGTTGTCACCGATGTAAACGGCACGCCTG TTATTTCCCGCCCAAACTACCAGCTCGCCCCGGGGCGATACGAGTTTTCGCTGGTGGAGCTGATTGATGCTCCGGATTTG AAGGTGTCGCCGGATGCGCATCAGAGAAAAACGCTGACCATAGAGGTCGCCCCTGGGATGCGCTATCACTTTGCCGCCCG TTATAAGGATGACAGGCGTTACTTCGGTAATAATCCCGATTTTTGGGAACCCGTTATCTGGCAAAGTGAAGCGGCCGAGT GTTCATTTGCCCCCTAG
Upstream 100 bases:
>100_bases AGGCCGAGGCGGCATCCTCCCTTGCCGCACAGGCCGAGATTGAAGCCAGTGATGAAGAAAGCTTTGATGAGTATCTCAAG GGCTACTTCAAAGGTGTGCC
Downstream 100 bases:
>100_bases TGTTTTTATCAACCCAGAATGACTGCCGTCACCCTTAGCCTTGTACGAATTGCATCTTAATCAATGACATGGGAAACTCG ACCCACTGGTTGTTGTTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MRAVLTLTLCAGLTACASSVDDANQCGWVSGYQDPPETERLYRAVVTDVNGTPVISRPNYQLAPGRYEFSLVELIDAPDL KVSPDAHQRKTLTIEVAPGMRYHFAARYKDDRRYFGNNPDFWEPVIWQSEAAECSFAP
Sequences:
>Translated_138_residues MRAVLTLTLCAGLTACASSVDDANQCGWVSGYQDPPETERLYRAVVTDVNGTPVISRPNYQLAPGRYEFSLVELIDAPDL KVSPDAHQRKTLTIEVAPGMRYHFAARYKDDRRYFGNNPDFWEPVIWQSEAAECSFAP >Mature_138_residues MRAVLTLTLCAGLTACASSVDDANQCGWVSGYQDPPETERLYRAVVTDVNGTPVISRPNYQLAPGRYEFSLVELIDAPDL KVSPDAHQRKTLTIEVAPGMRYHFAARYKDDRRYFGNNPDFWEPVIWQSEAAECSFAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15459; Mature: 15459
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAVLTLTLCAGLTACASSVDDANQCGWVSGYQDPPETERLYRAVVTDVNGTPVISRPNY CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC QLAPGRYEFSLVELIDAPDLKVSPDAHQRKTLTIEVAPGMRYHFAARYKDDRRYFGNNPD EECCCCEEEEEEEEECCCCCEECCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC FWEPVIWQSEAAECSFAP CCCCEEECCCCCCCCCCC >Mature Secondary Structure MRAVLTLTLCAGLTACASSVDDANQCGWVSGYQDPPETERLYRAVVTDVNGTPVISRPNY CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC QLAPGRYEFSLVELIDAPDLKVSPDAHQRKTLTIEVAPGMRYHFAARYKDDRRYFGNNPD EECCCCEEEEEEEEECCCCCEECCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC FWEPVIWQSEAAECSFAP CCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA