| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774076
Identifier: 119774076
GI number: 119774076
Start: 1135041
End: 1136564
Strand: Direct
Name: 119774076
Synonym: Sama_0939
Alternate gene names: NA
Gene position: 1135041-1136564 (Clockwise)
Preceding gene: 119774075
Following gene: 119774078
Centisome position: 26.36
GC content: 51.84
Gene sequence:
>1524_bases ATGAAAATAACGAAAATTGCTATCCTGGGTGGTGGTACTGCCGGTTGGTTGGCGGCCAACCATTTGGGGGCGGAGCTGTG TGCCGATAAGGAGGTTGAAATAACCCTTATCGAATCGCCGGAGATCCCAACCATTGGTGTGGGGGAGGGCACCGTGCCCT ATATCATGAAAGGCCTCAAACGCTTTGGCATATCTGAGTCCGAGCTGCTGGCAAACTGTGATACCACCTTCAAGCAGGGC ATTAAGTTCGTCAATTGGCTCGACCCTGAGCGCCACGGCGATAACCACTATTACCATCCTTTCGACTCACCTTATCCCGG TGGCATGGACATCAGCCATTACTGGCTGACCCAAAAAGATAAGCGCCCCTTTGATGATGTGGGTATACAGGCCCGGATTT GTGAAAAAAACCTGGCTCCCAAGCGTATCAGTGCTCCCGAATATCAGGGTGAACTGGCTTACGCCTATCATTTCAATGCG GTGAAGTTTGCTGCCTTGCTGGCTAAGAACGCCCGGGAGCGCTTTGGGGTCAAGTATCTGAGTGCCACAGTCGCAGGCGC GACGCTGAATGACGACGGCGCCATTGCCAGTCTGAATACCAAGGAAGTCGGTAGCTTGGCGTTCGATTTTTATGTCGATT GCAGCGGTTTTCACTCGGTACTGTTGGACAAGGTGCTTAAGGTGCCCTTTGTGGATAAAGGCAAAGAGCTGTTGACCGAC TCAGTGATAGTACAGCAGGTTCCCTTGAAGAGCGGTGAGGCGCTTTCGCCCTATACCAAGGCGACTGCGCATAAGGCGGG CTGGATTTGGGATATCCCTCTAACCACCCGTCGGGGTACCGGTTTCGTGTATTGCAGCCAATACATGAGCGATGAAGAGG CCGTTTCCACCTTTGCCCAATACCTTGGCATGGACGTGAGCGAGATATCGCCAAGAAAGATCCCGATGAAGATTGGTTAT CGGGAGAAGTTTTGGGCCAAAAATTGCGCCACCCTGGGGCTTGCTCAGGGCTTTGTGGAACCACTGGAAGCCACCTCGAT ACTGGTAACGGACTTTTCTGCAGAACTGCTGGCCAAAAACTTCCCCAGGGAAACCTCTGATATTGAGGTACTTAGCCCTT ACTACAATGATGTCATTACTTATGTATGGGAAAGGGTCATCGATTTTATCAAGCTGCATTACTGTCTCTCAGACAGGGAA GATACCGGCTTTTGGGCAGCCAATCGCGATTCCGACACCTGGTCCGAGACCCTAAAATCCCGACTGGCAAAGTTTGCACT CAGGCCTCCTCAGCAATCGGACTTTTTAAGCCGTTTTGATTTATTCGATGATAAAAACTTCCTGTATGTGCTCTATGGAA TGGGCTTTTCAAGCCGTATCAAGGCGCTCGACCCGAGGGAGATAGAGCAGAGCAGGCAGCTGTTGGAGAGTAACGACAAA TTGGCTGACAGGGCGGAGGAGTTGTTGATGGAGCACGGAAAGTGGCTCGCAGGTCTGAAGGCGGCCATGGCACGGGCATC ATAG
Upstream 100 bases:
>100_bases AACCACTTATAAGCTGGGCGCAAGCTTCAACTTCTAAGATAAATGTGTAATAAAAAACCCAGTCTCGGCTGGGTTTTTTT ATTGAAGGACAGGTCTGCAA
Downstream 100 bases:
>100_bases CCGTGATGGTGTAGGTGCGTTAAATAAAAAAGCCGGGTAACCCCGGCTTTTTCTATGCCTTTTGGGATTATTCGCCCATC ACCAGGTCGATTTGATTCAG
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MKITKIAILGGGTAGWLAANHLGAELCADKEVEITLIESPEIPTIGVGEGTVPYIMKGLKRFGISESELLANCDTTFKQG IKFVNWLDPERHGDNHYYHPFDSPYPGGMDISHYWLTQKDKRPFDDVGIQARICEKNLAPKRISAPEYQGELAYAYHFNA VKFAALLAKNARERFGVKYLSATVAGATLNDDGAIASLNTKEVGSLAFDFYVDCSGFHSVLLDKVLKVPFVDKGKELLTD SVIVQQVPLKSGEALSPYTKATAHKAGWIWDIPLTTRRGTGFVYCSQYMSDEEAVSTFAQYLGMDVSEISPRKIPMKIGY REKFWAKNCATLGLAQGFVEPLEATSILVTDFSAELLAKNFPRETSDIEVLSPYYNDVITYVWERVIDFIKLHYCLSDRE DTGFWAANRDSDTWSETLKSRLAKFALRPPQQSDFLSRFDLFDDKNFLYVLYGMGFSSRIKALDPREIEQSRQLLESNDK LADRAEELLMEHGKWLAGLKAAMARAS
Sequences:
>Translated_507_residues MKITKIAILGGGTAGWLAANHLGAELCADKEVEITLIESPEIPTIGVGEGTVPYIMKGLKRFGISESELLANCDTTFKQG IKFVNWLDPERHGDNHYYHPFDSPYPGGMDISHYWLTQKDKRPFDDVGIQARICEKNLAPKRISAPEYQGELAYAYHFNA VKFAALLAKNARERFGVKYLSATVAGATLNDDGAIASLNTKEVGSLAFDFYVDCSGFHSVLLDKVLKVPFVDKGKELLTD SVIVQQVPLKSGEALSPYTKATAHKAGWIWDIPLTTRRGTGFVYCSQYMSDEEAVSTFAQYLGMDVSEISPRKIPMKIGY REKFWAKNCATLGLAQGFVEPLEATSILVTDFSAELLAKNFPRETSDIEVLSPYYNDVITYVWERVIDFIKLHYCLSDRE DTGFWAANRDSDTWSETLKSRLAKFALRPPQQSDFLSRFDLFDDKNFLYVLYGMGFSSRIKALDPREIEQSRQLLESNDK LADRAEELLMEHGKWLAGLKAAMARAS >Mature_507_residues MKITKIAILGGGTAGWLAANHLGAELCADKEVEITLIESPEIPTIGVGEGTVPYIMKGLKRFGISESELLANCDTTFKQG IKFVNWLDPERHGDNHYYHPFDSPYPGGMDISHYWLTQKDKRPFDDVGIQARICEKNLAPKRISAPEYQGELAYAYHFNA VKFAALLAKNARERFGVKYLSATVAGATLNDDGAIASLNTKEVGSLAFDFYVDCSGFHSVLLDKVLKVPFVDKGKELLTD SVIVQQVPLKSGEALSPYTKATAHKAGWIWDIPLTTRRGTGFVYCSQYMSDEEAVSTFAQYLGMDVSEISPRKIPMKIGY REKFWAKNCATLGLAQGFVEPLEATSILVTDFSAELLAKNFPRETSDIEVLSPYYNDVITYVWERVIDFIKLHYCLSDRE DTGFWAANRDSDTWSETLKSRLAKFALRPPQQSDFLSRFDLFDDKNFLYVLYGMGFSSRIKALDPREIEQSRQLLESNDK LADRAEELLMEHGKWLAGLKAAMARAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 56846; Mature: 56846
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITKIAILGGGTAGWLAANHLGAELCADKEVEITLIESPEIPTIGVGEGTVPYIMKGLK CCEEEEEEEECCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHH RFGISESELLANCDTTFKQGIKFVNWLDPERHGDNHYYHPFDSPYPGGMDISHYWLTQKD HHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC KRPFDDVGIQARICEKNLAPKRISAPEYQGELAYAYHFNAVKFAALLAKNARERFGVKYL CCCCHHCCCEEEEHHCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCHHHH SATVAGATLNDDGAIASLNTKEVGSLAFDFYVDCSGFHSVLLDKVLKVPFVDKGKELLTD HHHHCCCEECCCCCEEECCHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHH SVIVQQVPLKSGEALSPYTKATAHKAGWIWDIPLTTRRGTGFVYCSQYMSDEEAVSTFAQ HHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEHHHCCCHHHHHHHHH YLGMDVSEISPRKIPMKIGYREKFWAKNCATLGLAQGFVEPLEATSILVTDFSAELLAKN HHCCCHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHC FPRETSDIEVLSPYYNDVITYVWERVIDFIKLHYCLSDREDTGFWAANRDSDTWSETLKS CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHH RLAKFALRPPQQSDFLSRFDLFDDKNFLYVLYGMGFSSRIKALDPREIEQSRQLLESNDK HHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCH LADRAEELLMEHGKWLAGLKAAMARAS HHHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MKITKIAILGGGTAGWLAANHLGAELCADKEVEITLIESPEIPTIGVGEGTVPYIMKGLK CCEEEEEEEECCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHH RFGISESELLANCDTTFKQGIKFVNWLDPERHGDNHYYHPFDSPYPGGMDISHYWLTQKD HHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC KRPFDDVGIQARICEKNLAPKRISAPEYQGELAYAYHFNAVKFAALLAKNARERFGVKYL CCCCHHCCCEEEEHHCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCHHHH SATVAGATLNDDGAIASLNTKEVGSLAFDFYVDCSGFHSVLLDKVLKVPFVDKGKELLTD HHHHCCCEECCCCCEEECCHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHH SVIVQQVPLKSGEALSPYTKATAHKAGWIWDIPLTTRRGTGFVYCSQYMSDEEAVSTFAQ HHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCEEEEHHHCCCHHHHHHHHH YLGMDVSEISPRKIPMKIGYREKFWAKNCATLGLAQGFVEPLEATSILVTDFSAELLAKN HHCCCHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHC FPRETSDIEVLSPYYNDVITYVWERVIDFIKLHYCLSDREDTGFWAANRDSDTWSETLKS CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHH RLAKFALRPPQQSDFLSRFDLFDDKNFLYVLYGMGFSSRIKALDPREIEQSRQLLESNDK HHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCH LADRAEELLMEHGKWLAGLKAAMARAS HHHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]