Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774006

Identifier: 119774006

GI number: 119774006

Start: 1060329

End: 1060712

Strand: Direct

Name: 119774006

Synonym: Sama_0869

Alternate gene names: NA

Gene position: 1060329-1060712 (Clockwise)

Preceding gene: 119774005

Following gene: 119774007

Centisome position: 24.62

GC content: 55.21

Gene sequence:

>384_bases
ATGAGACTCACTATTGTATCTGCCCTCGGATTATCCTTGTTGCCGCTATTTTCCTCGGCATCCGCGCTCGACACCTGTTC
GGAAGACAGTCGCTCTCCAGGTTGCCTGCTGTATCTCGAAGGCGTGGTCGATGGGGCTCTGATGTACAAAACCAGTGCAC
TGGGTGCCAGACCAGAATCCGATGGATTTGAGAGCAGGGCGCTCAAATATCGGGGTGGCAGTCGTTTCCAGGATGCCAAT
CGCCGCTATTGCGTGGACAGAATCCCCGATCGTAACGTGTTGGTGGAAGGGCTGACCGAAGCTGTGAGCTCTGGCGAAGT
GAAGGATCAGGAAGGCCTGGCCCAGGCCATGTACAGCCTGCTCGATTGTCAGCGTCTTAAGTAA

Upstream 100 bases:

>100_bases
GCGATTTGGCCCGTATTGGCATCTTGCTGGGTTCACTGTTTGCTGCGGTAATTGGCTATTTTTGGTTGTCCAAAGTGTTG
CCTAAAGCAGGAGAAAGAAT

Downstream 100 bases:

>100_bases
TGCAGCATCTGAATTACAACCATCTTTATTATTTCTGGATGGTACAGAGCAAGGGCTCGGTGGTAAAAGCTGCCGAGGCC
CTGTGCCTCACACCACAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRLTIVSALGLSLLPLFSSASALDTCSEDSRSPGCLLYLEGVVDGALMYKTSALGARPESDGFESRALKYRGGSRFQDAN
RRYCVDRIPDRNVLVEGLTEAVSSGEVKDQEGLAQAMYSLLDCQRLK

Sequences:

>Translated_127_residues
MRLTIVSALGLSLLPLFSSASALDTCSEDSRSPGCLLYLEGVVDGALMYKTSALGARPESDGFESRALKYRGGSRFQDAN
RRYCVDRIPDRNVLVEGLTEAVSSGEVKDQEGLAQAMYSLLDCQRLK
>Mature_127_residues
MRLTIVSALGLSLLPLFSSASALDTCSEDSRSPGCLLYLEGVVDGALMYKTSALGARPESDGFESRALKYRGGSRFQDAN
RRYCVDRIPDRNVLVEGLTEAVSSGEVKDQEGLAQAMYSLLDCQRLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13800; Mature: 13800

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTIVSALGLSLLPLFSSASALDTCSEDSRSPGCLLYLEGVVDGALMYKTSALGARPES
CEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEECCHHCCHHHHHHHHCCCCCCC
DGFESRALKYRGGSRFQDANRRYCVDRIPDRNVLVEGLTEAVSSGEVKDQEGLAQAMYSL
CCCCHHHEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LDCQRLK
HHHHCCC
>Mature Secondary Structure
MRLTIVSALGLSLLPLFSSASALDTCSEDSRSPGCLLYLEGVVDGALMYKTSALGARPES
CEEEHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEECCHHCCHHHHHHHHCCCCCCC
DGFESRALKYRGGSRFQDANRRYCVDRIPDRNVLVEGLTEAVSSGEVKDQEGLAQAMYSL
CCCCHHHEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LDCQRLK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA