Click here to switch to the map view.

The map label for this gene is 119773930

Identifier: 119773930

GI number: 119773930

Start: 977306

End: 978382

Strand: Direct

Name: 119773930

Synonym: Sama_0793

Alternate gene names: NA

Gene position: 977306-978382 (Clockwise)

Preceding gene: 119773926

Following gene: 119773931

Centisome position: 22.7

GC content: 57.47

Gene sequence:

>1077_bases
ATGTCCCAGCAAACCGGTGAAGCCTCGAAAATCAAAGGCCGCTTTCGTAATAGCCACAAGGTCTATGGCGCAGGTCTTGG
GGATTTGGTGGGCATCATCAAGGCGTATCTGGGCGCCAAACGCAGTGCTCCCAGCCCGAAAAGCGCCGTGCCATTGCAGC
CCATCACCCCCGCTGAGCTTGCCCGGCCTCAGGCGCGGTTATATCGACTGGGCCATTCCACTGTGCTGATGTATCTGGAT
GGCAAATGGCTGCTGACCGATCCTGTATTCAGTGAGCGAGCCTCACCGTTTCAGTGGGCCGGCCCCAAGCGGTTCCACCA
AAGTCCCATCGCCATTGAGGCGCTGCCGGACATCGATGGGCTGATTTTGAGCCACGATCATTACGACCATCTGGACACCG
CCGCCATTAAGGCACTCGCAGCGCGGGTAAAACACTTTTATATGCCTTTGGGCGTGGGTAAACGCCTTATCCGCCTCGGC
ATTGATAAGGCCAGGATAACTGAACTGGATTGGTGGCAGTCGGTACAACTTGGAACCATAGAGCTGACCGCGACCCCGGC
GCAGCATTTCTCTGGCCGTGGGCTGTTTGACAGAGACGCCACCCTGTGGGCCGGTTGGGCCATCCACGGTGAGCAGGCGC
GGGTATTTTTCAGCGGTGACTCGGGCTATTTTCCGGGTTTTGCCGAAATCGGTGAGCGACTAGGCCCCTTCGATGTGACC
CTGATGGAAACCGGCGCCTACAACGAGCTGTGGCGAGATATTCACATGATGCCCGAGGAGAGTTTGCAGGCACATCTGGA
TGTTAAAGGGCAGCTGATGGTGCCCATTCATAACGGCACCTTTGATTTGGCGCTGCACGACTGGTTTGAACCCCTTGAGC
GCATTCGCGCGCTGGCGTGGGACCGGTCGGTGAAGATTGCCACCCCGATTTTTGGTGAAGCCCTGAGTTTAACCCTGCCA
GGAAGCGGCAGTGATTGGTGGGCACAGGAGTCGGCTATTTCGACAGGTGTGGATGCCCGTGAGAAGGGAAGAGCCCCGGC
TGCTGAAAGCTCGATGGTCGGTATTGCTGAAAGCTAA

Upstream 100 bases:

>100_bases
TTACACTGAGCAGTTTACTTTTCCAAATTCATAAGTAAACTGCACAGTGTAGTTTACTTGTTGATGTCCAGTATCGTCTA
TCCAGTCAGGAGTCTGTAGC

Downstream 100 bases:

>100_bases
CACAAGTCTTTGAAACTTGGCATTTGGCCGCTTCTGCTCGTTCTGATTTCAGGCTTTTTCCTGGCTATACCGTTTGGTGT
TGTAAATAATAAGTTTTCAT

Product: outer membrane protein RomA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSQQTGEASKIKGRFRNSHKVYGAGLGDLVGIIKAYLGAKRSAPSPKSAVPLQPITPAELARPQARLYRLGHSTVLMYLD
GKWLLTDPVFSERASPFQWAGPKRFHQSPIAIEALPDIDGLILSHDHYDHLDTAAIKALAARVKHFYMPLGVGKRLIRLG
IDKARITELDWWQSVQLGTIELTATPAQHFSGRGLFDRDATLWAGWAIHGEQARVFFSGDSGYFPGFAEIGERLGPFDVT
LMETGAYNELWRDIHMMPEESLQAHLDVKGQLMVPIHNGTFDLALHDWFEPLERIRALAWDRSVKIATPIFGEALSLTLP
GSGSDWWAQESAISTGVDAREKGRAPAAESSMVGIAES

Sequences:

>Translated_358_residues
MSQQTGEASKIKGRFRNSHKVYGAGLGDLVGIIKAYLGAKRSAPSPKSAVPLQPITPAELARPQARLYRLGHSTVLMYLD
GKWLLTDPVFSERASPFQWAGPKRFHQSPIAIEALPDIDGLILSHDHYDHLDTAAIKALAARVKHFYMPLGVGKRLIRLG
IDKARITELDWWQSVQLGTIELTATPAQHFSGRGLFDRDATLWAGWAIHGEQARVFFSGDSGYFPGFAEIGERLGPFDVT
LMETGAYNELWRDIHMMPEESLQAHLDVKGQLMVPIHNGTFDLALHDWFEPLERIRALAWDRSVKIATPIFGEALSLTLP
GSGSDWWAQESAISTGVDAREKGRAPAAESSMVGIAES
>Mature_357_residues
SQQTGEASKIKGRFRNSHKVYGAGLGDLVGIIKAYLGAKRSAPSPKSAVPLQPITPAELARPQARLYRLGHSTVLMYLDG
KWLLTDPVFSERASPFQWAGPKRFHQSPIAIEALPDIDGLILSHDHYDHLDTAAIKALAARVKHFYMPLGVGKRLIRLGI
DKARITELDWWQSVQLGTIELTATPAQHFSGRGLFDRDATLWAGWAIHGEQARVFFSGDSGYFPGFAEIGERLGPFDVTL
METGAYNELWRDIHMMPEESLQAHLDVKGQLMVPIHNGTFDLALHDWFEPLERIRALAWDRSVKIATPIFGEALSLTLPG
SGSDWWAQESAISTGVDAREKGRAPAAESSMVGIAES

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=234, Percent_Identity=41.8803418803419, Blast_Score=196, Evalue=3e-50,
Organism=Homo sapiens, GI170932481, Length=234, Percent_Identity=41.8803418803419, Blast_Score=196, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17543102, Length=265, Percent_Identity=38.4905660377359, Blast_Score=184, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17543100, Length=265, Percent_Identity=38.4905660377359, Blast_Score=184, Evalue=6e-47,
Organism=Caenorhabditis elegans, GI25148824, Length=265, Percent_Identity=38.4905660377359, Blast_Score=184, Evalue=7e-47,
Organism=Caenorhabditis elegans, GI17543104, Length=292, Percent_Identity=37.6712328767123, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6325154, Length=277, Percent_Identity=31.0469314079422, Blast_Score=121, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39501; Mature: 39370

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQTGEASKIKGRFRNSHKVYGAGLGDLVGIIKAYLGAKRSAPSPKSAVPLQPITPAEL
CCCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
ARPQARLYRLGHSTVLMYLDGKWLLTDPVFSERASPFQWAGPKRFHQSPIAIEALPDIDG
CCHHHHHHHCCCCEEEEEECCCEEEECCHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCC
LILSHDHYDHLDTAAIKALAARVKHFYMPLGVGKRLIRLGIDKARITELDWWQSVQLGTI
EEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEECCCCCCCEEEEE
ELTATPAQHFSGRGLFDRDATLWAGWAIHGEQARVFFSGDSGYFPGFAEIGERLGPFDVT
EEEECCHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCHHHHHHHCCCCEEE
LMETGAYNELWRDIHMMPEESLQAHLDVKGQLMVPIHNGTFDLALHDWFEPLERIRALAW
EEECCCHHHHHHHHHCCCHHHHHEECCCCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHH
DRSVKIATPIFGEALSLTLPGSGSDWWAQESAISTGVDAREKGRAPAAESSMVGIAES
CCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCEEECCC
>Mature Secondary Structure 
SQQTGEASKIKGRFRNSHKVYGAGLGDLVGIIKAYLGAKRSAPSPKSAVPLQPITPAEL
CCCCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
ARPQARLYRLGHSTVLMYLDGKWLLTDPVFSERASPFQWAGPKRFHQSPIAIEALPDIDG
CCHHHHHHHCCCCEEEEEECCCEEEECCHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCC
LILSHDHYDHLDTAAIKALAARVKHFYMPLGVGKRLIRLGIDKARITELDWWQSVQLGTI
EEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEECCCCCCCEEEEE
ELTATPAQHFSGRGLFDRDATLWAGWAIHGEQARVFFSGDSGYFPGFAEIGERLGPFDVT
EEEECCHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCHHHHHHHCCCCEEE
LMETGAYNELWRDIHMMPEESLQAHLDVKGQLMVPIHNGTFDLALHDWFEPLERIRALAW
EEECCCHHHHHHHHHCCCHHHHHEECCCCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHH
DRSVKIATPIFGEALSLTLPGSGSDWWAQESAISTGVDAREKGRAPAAESSMVGIAES
CCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]