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The map label for this gene is ybiF [C]

Identifier: 119773884

GI number: 119773884

Start: 918563

End: 919456

Strand: Direct

Name: ybiF [C]

Synonym: Sama_0746

Alternate gene names: 119773884

Gene position: 918563-919456 (Clockwise)

Preceding gene: 119773881

Following gene: 119773885

Centisome position: 21.33

GC content: 58.61

Gene sequence:

>894_bases
ATGAACAATACCCAACAAAACCTGCCTCACCGCTGGAATAGCCGATTGTGGTTTTTGACCGCATTGACCATGTTGGCCTT
TGCCGCCAACTCTTTGCTGTGCCGCGAGGCGCTGGCATCGGGCAGCATAGACGCCGCCAGTTTTACCCTGGTTCGTATGG
TCAGTGGCGCTGTGGTGCTGGCGGTGTTGGCCCTGATGCAGGTTAAGGGGCAGGCTCTCGCAGGTAATTGGCGCTCCGCC
ACTGCCTTGTTGGGATATGCAGTCGCTTTCTCCTTTGCCTATCACAGCCTGAGCACAGCCACCGGCGCCCTGGTGCTCTT
TGGTGCGGTGCAGGGTTCCATGATTGGTTTTGGCTTCTGGTCCGGGGAAAGATTGGGCCCGTTGCAAATGTTCGGTGTCG
TACTTGCCATGGTGGGGCTGGGATGGTTTTTACTCCCGGGCGTTACCTCTCCGGACCCATTTGGTGCAGCGCTGATGCTG
CTTGCCGGTGCTTGTTGGGGGGCCTATTCCCTGTTGGGACGAGGAGTAGCATCGCCTTTGGCAGCCACGGCGGGCAACTT
TGTCCGCACCGTGCCACTGGCTCTGGTGCTCTATGGACTCTTCGCATTAACCGGTCTTTCCGATGGGGCTGGGCAGGGAA
TCAATCTCTCCGGCATGGGAGTGGTCTATGGCCTGGCCTCGGGGGCTTTGGCATCAGGGCTTGGTTACGCACTCTGGTAC
TCGGTGCTGCCACAGCTTGAAGCCACCACGGCCGCTACTGTGCAGCTCAGTGTGCCCATTATCGCGGCCTTCGGTGGCTG
GTTGCTCCTTGGTGAGGCAATGAGTTTACGGCTCATTGTCAGCGCTTTTGCTGTGCTGGGTGGTATAGCTCTGGTGGTTA
GGTTGAGGCGCTAA

Upstream 100 bases:

>100_bases
TCATTTGCAACTGCAACTGAGGCGTGAGGTGTCTTATAATTCATTATTTTATATGGGATTTATTGGCAGGCTTGCTGCGT
GCAGACGAGGTGGAAACAAG

Downstream 100 bases:

>100_bases
CCAACAGAGAAGTAAAGAAAAAGTGAAAAGTAGTATGCAGCAGTACGCCCGAAGGTCTATCATTTAATCCACATGTTTTT
TCGGCGCTTTTATTATTGCC

Product: DMT family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNNTQQNLPHRWNSRLWFLTALTMLAFAANSLLCREALASGSIDAASFTLVRMVSGAVVLAVLALMQVKGQALAGNWRSA
TALLGYAVAFSFAYHSLSTATGALVLFGAVQGSMIGFGFWSGERLGPLQMFGVVLAMVGLGWFLLPGVTSPDPFGAALML
LAGACWGAYSLLGRGVASPLAATAGNFVRTVPLALVLYGLFALTGLSDGAGQGINLSGMGVVYGLASGALASGLGYALWY
SVLPQLEATTAATVQLSVPIIAAFGGWLLLGEAMSLRLIVSAFAVLGGIALVVRLRR

Sequences:

>Translated_297_residues
MNNTQQNLPHRWNSRLWFLTALTMLAFAANSLLCREALASGSIDAASFTLVRMVSGAVVLAVLALMQVKGQALAGNWRSA
TALLGYAVAFSFAYHSLSTATGALVLFGAVQGSMIGFGFWSGERLGPLQMFGVVLAMVGLGWFLLPGVTSPDPFGAALML
LAGACWGAYSLLGRGVASPLAATAGNFVRTVPLALVLYGLFALTGLSDGAGQGINLSGMGVVYGLASGALASGLGYALWY
SVLPQLEATTAATVQLSVPIIAAFGGWLLLGEAMSLRLIVSAFAVLGGIALVVRLRR
>Mature_297_residues
MNNTQQNLPHRWNSRLWFLTALTMLAFAANSLLCREALASGSIDAASFTLVRMVSGAVVLAVLALMQVKGQALAGNWRSA
TALLGYAVAFSFAYHSLSTATGALVLFGAVQGSMIGFGFWSGERLGPLQMFGVVLAMVGLGWFLLPGVTSPDPFGAALML
LAGACWGAYSLLGRGVASPLAATAGNFVRTVPLALVLYGLFALTGLSDGAGQGINLSGMGVVYGLASGALASGLGYALWY
SVLPQLEATTAATVQLSVPIIAAFGGWLLLGEAMSLRLIVSAFAVLGGIALVVRLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30635; Mature: 30635

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTQQNLPHRWNSRLWFLTALTMLAFAANSLLCREALASGSIDAASFTLVRMVSGAVVL
CCCCHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVLALMQVKGQALAGNWRSATALLGYAVAFSFAYHSLSTATGALVLFGAVQGSMIGFGFW
HHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
SGERLGPLQMFGVVLAMVGLGWFLLPGVTSPDPFGAALMLLAGACWGAYSLLGRGVASPL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AATAGNFVRTVPLALVLYGLFALTGLSDGAGQGINLSGMGVVYGLASGALASGLGYALWY
HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVLPQLEATTAATVQLSVPIIAAFGGWLLLGEAMSLRLIVSAFAVLGGIALVVRLRR
HHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNTQQNLPHRWNSRLWFLTALTMLAFAANSLLCREALASGSIDAASFTLVRMVSGAVVL
CCCCHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AVLALMQVKGQALAGNWRSATALLGYAVAFSFAYHSLSTATGALVLFGAVQGSMIGFGFW
HHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
SGERLGPLQMFGVVLAMVGLGWFLLPGVTSPDPFGAALMLLAGACWGAYSLLGRGVASPL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AATAGNFVRTVPLALVLYGLFALTGLSDGAGQGINLSGMGVVYGLASGALASGLGYALWY
HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVLPQLEATTAATVQLSVPIIAAFGGWLLLGEAMSLRLIVSAFAVLGGIALVVRLRR
HHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043; 1938886 [H]