| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773854
Identifier: 119773854
GI number: 119773854
Start: 879995
End: 880399
Strand: Direct
Name: 119773854
Synonym: Sama_0716
Alternate gene names: NA
Gene position: 879995-880399 (Clockwise)
Preceding gene: 119773853
Following gene: 119773855
Centisome position: 20.44
GC content: 53.09
Gene sequence:
>405_bases ATGAAATTGAAGTATCTCTCTCTGGTCGCCGCATTAACGGGTCTTGCTGCCTGCTCTTCCACCGAGCCGCCGCCACGGGT CGCGCAGGACAAAAAAGTGGCCGTGGAAGGTGTTGAGCTCACCTTCGGTGGCAGCTTTGATGAGCGTAAAAATCTGCTGG TGCTGAAGGTGAATGGCGATCCCATCATGCAGGGCTCTTTCCCTCCTTACACCCCAACCCAGAACCTGAGTGCCAAATAC AAGGATATGAACATCAAAGGAAATTGCTACTTTGGTTCAGTACTTGGCCGTCAGGGTGGGGCATTCGGCGCCATTGCCGG TGCTATTCAATCGTCCAAAAACAGCACCGCCGACAAGTGTGAGCTGCTGGTGGATGGCAAGCAGGTAGAACAGCTGTATT TCTGA
Upstream 100 bases:
>100_bases GTACATGTACAACCTGCTCAAGTAAGCTTTTTTATTTATACAAGTCGCTGATTATTAAGAACACAACTGGATTTTTACCC CAAAAAGGAAGTCGTTGAAA
Downstream 100 bases:
>100_bases TTGTGAGCCTGTGCGGGGCGGTATGTTGCCGCCCTTTTTTATGGATAGTTGATGGAGATGGCCCAGAGCCATACAGGATG TTTCCATGATGAAATTCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF
Sequences:
>Translated_134_residues MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF >Mature_134_residues MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14311; Mature: 14311
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGD CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCC PIMQGSFPPYTPTQNLSAKYKDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKC EEEECCCCCCCCCCCCCCEEECCCCCCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCE ELLVDGKQVEQLYF EEEECCHHHHHHCC >Mature Secondary Structure MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGD CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCC PIMQGSFPPYTPTQNLSAKYKDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKC EEEECCCCCCCCCCCCCCEEECCCCCCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCE ELLVDGKQVEQLYF EEEECCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA