| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773800
Identifier: 119773800
GI number: 119773800
Start: 818050
End: 818658
Strand: Direct
Name: 119773800
Synonym: Sama_0662
Alternate gene names: NA
Gene position: 818050-818658 (Clockwise)
Preceding gene: 119773798
Following gene: 119773801
Centisome position: 19.0
GC content: 51.89
Gene sequence:
>609_bases ATGGAAATTCGCCCTCCCCAACCCAATCACGGTGCCACCGTGTCTCAAGTGGCAAAAGATAAAAGCCCTGTCGCTGGTAA AAACCATGGTGAGACGGTTGCCGTCGTTGCCAGCCAGAAGACAGCCGCACATTCAAGCCGTGCCTTGATGAACGCTGCGA TACTCTCTGCACAGCAGGAGGTTAATTTAAGTGCAGCCGACGAACCCATGGTATTACTGTATCGTGCCGCTATCGAAGCC ATTAATGAACAGCTCGCGCCCACAATGGGGGAACAGGCCATTGAGCGCCTCGCCGAGGAAGGTGTTGATACCTCACCCGA AGCCACGGCTGGCAGAATAGTTGATTTTGCCACCCAATTCTTCAGCCTCTATCAGTCTCAAAATAGCAGCCAGCCATTGG AACAGCAGTTGGAAGGGTTTATGGGGGTGATTGGCGGTGCTATTGATCAGGGCTTTAAAGAGGCCAGAGACATACTCAGT GGTCTTAAGGTGCTGGAAGGGGATATCGCAGATGGCGTTGATAGGACCTACGCTCTGGTGCAGCAGGGGCTTAAGGATTT TGCCCAGAAGATGAATCCACAAAGTAAAGAAGAGAGTGCAGCAGGATAA
Upstream 100 bases:
>100_bases CGTTGCTTTCGTGCAACACAAGGGCGACTTTTTACTAAAGTTGTACAAAAATTATCCGATATATAGGCTGAGTCGACTTG TGTCAGGATCGAGGTAATCC
Downstream 100 bases:
>100_bases ACGCCTCCGATAAAAAGGGTTTTTATTTTTTTCTCCCTTGCTTATGCTGGAACTGCAGCCACAGAGTAGGGGAGGCGATA TGTGGGTTGAAGGCCGGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MEIRPPQPNHGATVSQVAKDKSPVAGKNHGETVAVVASQKTAAHSSRALMNAAILSAQQEVNLSAADEPMVLLYRAAIEA INEQLAPTMGEQAIERLAEEGVDTSPEATAGRIVDFATQFFSLYQSQNSSQPLEQQLEGFMGVIGGAIDQGFKEARDILS GLKVLEGDIADGVDRTYALVQQGLKDFAQKMNPQSKEESAAG
Sequences:
>Translated_202_residues MEIRPPQPNHGATVSQVAKDKSPVAGKNHGETVAVVASQKTAAHSSRALMNAAILSAQQEVNLSAADEPMVLLYRAAIEA INEQLAPTMGEQAIERLAEEGVDTSPEATAGRIVDFATQFFSLYQSQNSSQPLEQQLEGFMGVIGGAIDQGFKEARDILS GLKVLEGDIADGVDRTYALVQQGLKDFAQKMNPQSKEESAAG >Mature_202_residues MEIRPPQPNHGATVSQVAKDKSPVAGKNHGETVAVVASQKTAAHSSRALMNAAILSAQQEVNLSAADEPMVLLYRAAIEA INEQLAPTMGEQAIERLAEEGVDTSPEATAGRIVDFATQFFSLYQSQNSSQPLEQQLEGFMGVIGGAIDQGFKEARDILS GLKVLEGDIADGVDRTYALVQQGLKDFAQKMNPQSKEESAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21467; Mature: 21467
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIRPPQPNHGATVSQVAKDKSPVAGKNHGETVAVVASQKTAAHSSRALMNAAILSAQQE CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH VNLSAADEPMVLLYRAAIEAINEQLAPTMGEQAIERLAEEGVDTSPEATAGRIVDFATQF CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH FSLYQSQNSSQPLEQQLEGFMGVIGGAIDQGFKEARDILSGLKVLEGDIADGVDRTYALV HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQGLKDFAQKMNPQSKEESAAG HHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MEIRPPQPNHGATVSQVAKDKSPVAGKNHGETVAVVASQKTAAHSSRALMNAAILSAQQE CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH VNLSAADEPMVLLYRAAIEAINEQLAPTMGEQAIERLAEEGVDTSPEATAGRIVDFATQF CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH FSLYQSQNSSQPLEQQLEGFMGVIGGAIDQGFKEARDILSGLKVLEGDIADGVDRTYALV HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQGLKDFAQKMNPQSKEESAAG HHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA