| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773729
Identifier: 119773729
GI number: 119773729
Start: 738742
End: 739443
Strand: Direct
Name: 119773729
Synonym: Sama_0591
Alternate gene names: NA
Gene position: 738742-739443 (Clockwise)
Preceding gene: 119773723
Following gene: 119773730
Centisome position: 17.16
GC content: 54.13
Gene sequence:
>702_bases ATGTTTCTCGAGCCTTTTTTTACTCAAACTGATGAAACTGTAACGATTTCCCCTTTTCAGGCCAGCGAGTTTGCCAAGCG GGTTGCAGAAGATTTCAACCCTATTCATGACGAAAGTGCCAAGCGCTTTTGTGTGCCCGGTGACCTTTTGTTTGCACTGG TGCTGAGCCACTATGGCCTGAGCCAGAAGATGCAATTCAAGTTCGAAGGCATGGTAGGCGAGGGCGTGTGCCTGAACTTC CCGGTCGAGGTGGGCGACAGCTTCCCAATCTGTGACAGCCGCGATAAGACTTACCTCAGCGTCAGCCGCCAGGGCGACGT AAGCCGCTGCGAGACCCAAATCGAGTCTTTCGTGCGCAGCTATGTGTCTTTCTCAGGGCTTAACTTTATTCATGTGCTGG TGCCCATGATGCGTGAGCACGGGGTCATGATTAACCCCGATCGTCCACTGGTGATCTACGAAAGTATGGCGTTCGATCTC ACAACCCTGGATTTCGATCAGGTTGCACTCGAGCTCAGTGATGCGCGCCTCAGTGTGGATGGCAAGCGTGGTGACGTGAC GCTGGAATTTGCCCTTATCAGCGATGGTAAGCAGGTTGGCACCGGCGTTAAGACCCTGGTGATGAGTGGCCTGCGAGCTC TCGATGAAGCAGCCCTCGATGGTATGGCACAGTTCTACGAAGAGCGCCGCGCCACCCTGTAA
Upstream 100 bases:
>100_bases CTTACTGGCGCAAGTCATCGGGTGAGTTAATTGTCATAATTGAGGTAGACTGCTTGGCCTAAAAAAACGACACAACAAGA TTTCAGGTGTATCACTGCCT
Downstream 100 bases:
>100_bases CGCACAGCTTGGCTTAAATTCCCGCCAAACAGTGCGCAAAGCCTGATATGGCGCCGCTTCAAGGCCCCGTGTGATTGCCA TCCACGGGGCTTTCCTTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MFLEPFFTQTDETVTISPFQASEFAKRVAEDFNPIHDESAKRFCVPGDLLFALVLSHYGLSQKMQFKFEGMVGEGVCLNF PVEVGDSFPICDSRDKTYLSVSRQGDVSRCETQIESFVRSYVSFSGLNFIHVLVPMMREHGVMINPDRPLVIYESMAFDL TTLDFDQVALELSDARLSVDGKRGDVTLEFALISDGKQVGTGVKTLVMSGLRALDEAALDGMAQFYEERRATL
Sequences:
>Translated_233_residues MFLEPFFTQTDETVTISPFQASEFAKRVAEDFNPIHDESAKRFCVPGDLLFALVLSHYGLSQKMQFKFEGMVGEGVCLNF PVEVGDSFPICDSRDKTYLSVSRQGDVSRCETQIESFVRSYVSFSGLNFIHVLVPMMREHGVMINPDRPLVIYESMAFDL TTLDFDQVALELSDARLSVDGKRGDVTLEFALISDGKQVGTGVKTLVMSGLRALDEAALDGMAQFYEERRATL >Mature_233_residues MFLEPFFTQTDETVTISPFQASEFAKRVAEDFNPIHDESAKRFCVPGDLLFALVLSHYGLSQKMQFKFEGMVGEGVCLNF PVEVGDSFPICDSRDKTYLSVSRQGDVSRCETQIESFVRSYVSFSGLNFIHVLVPMMREHGVMINPDRPLVIYESMAFDL TTLDFDQVALELSDARLSVDGKRGDVTLEFALISDGKQVGTGVKTLVMSGLRALDEAALDGMAQFYEERRATL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26043; Mature: 26043
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLEPFFTQTDETVTISPFQASEFAKRVAEDFNPIHDESAKRFCVPGDLLFALVLSHYGL CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHCCC SQKMQFKFEGMVGEGVCLNFPVEVGDSFPICDSRDKTYLSVSRQGDVSRCETQIESFVRS CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH YVSFSGLNFIHVLVPMMREHGVMINPDRPLVIYESMAFDLTTLDFDQVALELSDARLSVD HHHHCCCHHHHHHHHHHHHCCEEECCCCCEEEEECCEEEEEECCHHHHHHEECCCEEEEC GKRGDVTLEFALISDGKQVGTGVKTLVMSGLRALDEAALDGMAQFYEERRATL CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFLEPFFTQTDETVTISPFQASEFAKRVAEDFNPIHDESAKRFCVPGDLLFALVLSHYGL CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHCCC SQKMQFKFEGMVGEGVCLNFPVEVGDSFPICDSRDKTYLSVSRQGDVSRCETQIESFVRS CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH YVSFSGLNFIHVLVPMMREHGVMINPDRPLVIYESMAFDLTTLDFDQVALELSDARLSVD HHHHCCCHHHHHHHHHHHHCCEEECCCCCEEEEECCEEEEEECCHHHHHHEECCCEEEEC GKRGDVTLEFALISDGKQVGTGVKTLVMSGLRALDEAALDGMAQFYEERRATL CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA