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The map label for this gene is yddU [C]

Identifier: 119773636

GI number: 119773636

Start: 608979

End: 611282

Strand: Direct

Name: yddU [C]

Synonym: Sama_0496

Alternate gene names: 119773636

Gene position: 608979-611282 (Clockwise)

Preceding gene: 119773635

Following gene: 119773637

Centisome position: 14.14

GC content: 53.21

Gene sequence:

>2304_bases
ATGCAGGAGCCTGGATGGAACGGTCAGTGCGAGTTGCTGTTAATTGCGGGGGGGCTTATCGTGGGTAAACTGTTTGCCAG
TGCCCGTAAACTTGATGAACAGCCGCTTCAGCCTGAGGCGCCTGTTGCACCCTGGATCATCGGTATTATTGACGATGAGC
CTGCCATTCACGATGTCACCCGTTTGGCCCTGAAACATGTTCGTGTATTCGGACGGCCCCTTGAGTTTGTATCGGCATTC
AGTGCCAAAGAAGGCTTCGACCTGGTGAAAAAACACCCCGAGATGGCATTGGTGCTGCTCGACGTGGTGATGGAAACCGA
TGAAGCCGGTTTGATGCTGGTGGACCGTATTCGCAATGAACTCGATAACCACCTGTTGCAAATTGTCCTCCGGACAGGCC
AGCCAGGTTATACCCCCGAAGAAGAAGTTATCCTCAAGTACGAAATTAACTCCTACAAGACCAAGAGCGAGCTGACGCGC
AATAAGCTGTTTACCGTGGTGGCAACCGGACTGAGATGCTTCAGTCAGATGGATGCGTTGGAGCGCAGTCGTCAGGGATT
AAGGTCGGTGATTAATGCGGCCGCCAATCTGTTTCAGGAACGATCGCTCCATGAGTTTGCCGGCGGGGTGCTCGAGCAAA
TCGATGCCCTCTTCAACATCAAGGCCGATAGCCTCTTCTGTGTATCCAAACGGCCGATGAACGGGCCCTTTGCCATAGAT
TCCGGTAATCACGAGTTTTTTGTGGTTGCTGCCAGCGACAAGTTCCGCCCCTTCTACGGTAAAAGTCTGGACGAGCTGAG
TCCCGAGCTTGAACAGCGCAAGCTGGTGCAGGAAACCCTCAACGCCCACCAGCATGTATTTCATCCCAATTGCAGCTGCT
TATATCTGTCGACGCCATCGGGCTGGCAAGGCGTTATCGTCGCGGAAAATGCCACCGGTCTGACCAAGGTGGATCAGGAG
CTGTTACAGGTGTTTTGCCTGAATGTGGCGCTGGGGCTGGAAAATGCCAAGTTTTTTGCTCACCTCAATAAGGCGGCCTT
CTTCGATGAGCTCACCGGCCTGCATAACCGCGCCGGATTGGTGGAATATGGCGCCAGCTTCCTGAAACAATTTGACCCGG
GAGCTGCGAGTCTCTTTATGGTGGATATCGATTATTTCCATCAGATTATCGAGTCTCTGGGTTACGAGTTTGGTAACAAC
ATTCTGGAAAAAATGTCCCGGGTATTGCGTAAAGAGTTTTCCACCCGCGCCCTGATTGCCCGCTTGCATGCGGATGTGTT
TGCCGTGCTGTTGCCGGAGTCAAAGCTGACGGCCCATGAATTGGCGGTGCGCTGCGCCAAGCCACTGATGATAGATGAGC
AATCGATTCGATTGGGGCTGACAGTGGGCTGCTCTGTGCTGGATGCCGCGCAGGAGCCGGATATGGAGCAGATGCTCCGG
CATGCTGAGTCGGCGCTGAAAGTTGCCAAGGAGCACAGGCGTGGCTCTGGAGAGACCTTCAATAAGCGCTACGAGCAGGC
CTCAAGAGACAGCATGACTGTGTTGAGTGACCTGCGTATTGCACTGGATAACAGAGAGCTCTATCTGGTGCTGCAACCCA
AGGTGAACATACACACCGGTGCCGTAGTGGGCTATGAAGCCCTCATCCGCTGGCAGCATCCGGAAAAGGGGAATATCCCC
CCGGGAGCCTTTATTCCTGCGGTGGAAAAATCGGGACTCTATTACGGCCTGGATCTCTATGTAGCGCGGGCGGCCTGCGA
GCTTATGACTCAGCATCCTGAGTTGAATGTGCCTGTGTCATTGAATATTTCTGCCAATTCACTCCATCACGAGACCTTTG
TCGACGATCTCAAGGCCGAGTTTCTCCGTGCGGGAGTGCCCTTCGACAGGGTAGAGCTGGAAATCACCGAAAATGCACTG
GTGCACTCAGACCGGGCCATCAGTGAGCTGCATAGGCTGCACCAGAGCGGCTTTATCATCTGTTTGGATGACTTTGGGGC
CGGTTTCTCATCGCTGGGATACTTATTGAGATTGCCGATACAGGTCATCAAGATTGACAGGGCCTTTATCTCTCATCTCA
CCGACAGCGATGAAGCTATCGCCGTGTTGCAGGGCATCTTGCGCATAGGGCGTGATCTCAATAAACAGCTGATCATTGAA
GGGGTTGAAACCGAAGCGCAACTGGAGCTGCTTAAATCCATGCAGGTGGATTTTGTGCAGGGATTTTATTTCCACCGACC
TTTGCCAGTTAGTGAGGCGTTGGCGCTGCTCGAACCTGTGCGGAGTACCACTTCATATCTTTAA

Upstream 100 bases:

>100_bases
TGTTGGGTGTTACCGCTTTCATCAGTTTAAGACTACCTGGCAATAGCGTTGGCTAACATTATCGGGTATTAATTGCTGCT
ACACTTGAACCAAGTCTTTA

Downstream 100 bases:

>100_bases
ACATAAAACTTTTTGAGTTTTATACGCTTTTTCGGCAATCTGCTTATGTACTTACAGCGTGATTGCAGGAGGCAATGCCA
TGAGTATGACCCTGACGTTT

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 767; Mature: 767

Protein sequence:

>767_residues
MQEPGWNGQCELLLIAGGLIVGKLFASARKLDEQPLQPEAPVAPWIIGIIDDEPAIHDVTRLALKHVRVFGRPLEFVSAF
SAKEGFDLVKKHPEMALVLLDVVMETDEAGLMLVDRIRNELDNHLLQIVLRTGQPGYTPEEEVILKYEINSYKTKSELTR
NKLFTVVATGLRCFSQMDALERSRQGLRSVINAAANLFQERSLHEFAGGVLEQIDALFNIKADSLFCVSKRPMNGPFAID
SGNHEFFVVAASDKFRPFYGKSLDELSPELEQRKLVQETLNAHQHVFHPNCSCLYLSTPSGWQGVIVAENATGLTKVDQE
LLQVFCLNVALGLENAKFFAHLNKAAFFDELTGLHNRAGLVEYGASFLKQFDPGAASLFMVDIDYFHQIIESLGYEFGNN
ILEKMSRVLRKEFSTRALIARLHADVFAVLLPESKLTAHELAVRCAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLR
HAESALKVAKEHRRGSGETFNKRYEQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTGAVVGYEALIRWQHPEKGNIP
PGAFIPAVEKSGLYYGLDLYVARAACELMTQHPELNVPVSLNISANSLHHETFVDDLKAEFLRAGVPFDRVELEITENAL
VHSDRAISELHRLHQSGFIICLDDFGAGFSSLGYLLRLPIQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIE
GVETEAQLELLKSMQVDFVQGFYFHRPLPVSEALALLEPVRSTTSYL

Sequences:

>Translated_767_residues
MQEPGWNGQCELLLIAGGLIVGKLFASARKLDEQPLQPEAPVAPWIIGIIDDEPAIHDVTRLALKHVRVFGRPLEFVSAF
SAKEGFDLVKKHPEMALVLLDVVMETDEAGLMLVDRIRNELDNHLLQIVLRTGQPGYTPEEEVILKYEINSYKTKSELTR
NKLFTVVATGLRCFSQMDALERSRQGLRSVINAAANLFQERSLHEFAGGVLEQIDALFNIKADSLFCVSKRPMNGPFAID
SGNHEFFVVAASDKFRPFYGKSLDELSPELEQRKLVQETLNAHQHVFHPNCSCLYLSTPSGWQGVIVAENATGLTKVDQE
LLQVFCLNVALGLENAKFFAHLNKAAFFDELTGLHNRAGLVEYGASFLKQFDPGAASLFMVDIDYFHQIIESLGYEFGNN
ILEKMSRVLRKEFSTRALIARLHADVFAVLLPESKLTAHELAVRCAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLR
HAESALKVAKEHRRGSGETFNKRYEQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTGAVVGYEALIRWQHPEKGNIP
PGAFIPAVEKSGLYYGLDLYVARAACELMTQHPELNVPVSLNISANSLHHETFVDDLKAEFLRAGVPFDRVELEITENAL
VHSDRAISELHRLHQSGFIICLDDFGAGFSSLGYLLRLPIQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIE
GVETEAQLELLKSMQVDFVQGFYFHRPLPVSEALALLEPVRSTTSYL
>Mature_767_residues
MQEPGWNGQCELLLIAGGLIVGKLFASARKLDEQPLQPEAPVAPWIIGIIDDEPAIHDVTRLALKHVRVFGRPLEFVSAF
SAKEGFDLVKKHPEMALVLLDVVMETDEAGLMLVDRIRNELDNHLLQIVLRTGQPGYTPEEEVILKYEINSYKTKSELTR
NKLFTVVATGLRCFSQMDALERSRQGLRSVINAAANLFQERSLHEFAGGVLEQIDALFNIKADSLFCVSKRPMNGPFAID
SGNHEFFVVAASDKFRPFYGKSLDELSPELEQRKLVQETLNAHQHVFHPNCSCLYLSTPSGWQGVIVAENATGLTKVDQE
LLQVFCLNVALGLENAKFFAHLNKAAFFDELTGLHNRAGLVEYGASFLKQFDPGAASLFMVDIDYFHQIIESLGYEFGNN
ILEKMSRVLRKEFSTRALIARLHADVFAVLLPESKLTAHELAVRCAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLR
HAESALKVAKEHRRGSGETFNKRYEQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTGAVVGYEALIRWQHPEKGNIP
PGAFIPAVEKSGLYYGLDLYVARAACELMTQHPELNVPVSLNISANSLHHETFVDDLKAEFLRAGVPFDRVELEITENAL
VHSDRAISELHRLHQSGFIICLDDFGAGFSSLGYLLRLPIQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIE
GVETEAQLELLKSMQVDFVQGFYFHRPLPVSEALALLEPVRSTTSYL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=29.0249433106576, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1787541, Length=411, Percent_Identity=31.1435523114355, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=37.6569037656904, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI226510982, Length=361, Percent_Identity=31.3019390581717, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=33.739837398374, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=29.6442687747036, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=30.0847457627119, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=31.4285714285714, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=30.241935483871, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788849, Length=284, Percent_Identity=24.6478873239437, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87082096, Length=320, Percent_Identity=23.75, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787055, Length=370, Percent_Identity=24.3243243243243, Blast_Score=92, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85730; Mature: 85730

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEPGWNGQCELLLIAGGLIVGKLFASARKLDEQPLQPEAPVAPWIIGIIDDEPAIHDVT
CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH
RLALKHVRVFGRPLEFVSAFSAKEGFDLVKKHPEMALVLLDVVMETDEAGLMLVDRIRNE
HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LDNHLLQIVLRTGQPGYTPEEEVILKYEINSYKTKSELTRNKLFTVVATGLRCFSQMDAL
HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ERSRQGLRSVINAAANLFQERSLHEFAGGVLEQIDALFNIKADSLFCVSKRPMNGPFAID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEE
SGNHEFFVVAASDKFRPFYGKSLDELSPELEQRKLVQETLNAHQHVFHPNCSCLYLSTPS
CCCCEEEEEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCC
GWQGVIVAENATGLTKVDQELLQVFCLNVALGLENAKFFAHLNKAAFFDELTGLHNRAGL
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHCCCH
VEYGASFLKQFDPGAASLFMVDIDYFHQIIESLGYEFGNNILEKMSRVLRKEFSTRALIA
HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLHADVFAVLLPESKLTAHELAVRCAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLR
HHHHHHHEEECCCCCHHHHHHHHHHCCCCEECCCCEEEEEEECHHHHHHCCCCCHHHHHH
HAESALKVAKEHRRGSGETFNKRYEQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTG
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHEECCCEEEEEECCCCCEECC
AVVGYEALIRWQHPEKGNIPPGAFIPAVEKSGLYYGLDLYVARAACELMTQHPELNVPVS
HHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEE
LNISANSLHHETFVDDLKAEFLRAGVPFDRVELEITENALVHSDRAISELHRLHQSGFII
EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCEEE
CLDDFGAGFSSLGYLLRLPIQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIE
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHEEE
GVETEAQLELLKSMQVDFVQGFYFHRPLPVSEALALLEPVRSTTSYL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQEPGWNGQCELLLIAGGLIVGKLFASARKLDEQPLQPEAPVAPWIIGIIDDEPAIHDVT
CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH
RLALKHVRVFGRPLEFVSAFSAKEGFDLVKKHPEMALVLLDVVMETDEAGLMLVDRIRNE
HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LDNHLLQIVLRTGQPGYTPEEEVILKYEINSYKTKSELTRNKLFTVVATGLRCFSQMDAL
HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ERSRQGLRSVINAAANLFQERSLHEFAGGVLEQIDALFNIKADSLFCVSKRPMNGPFAID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEE
SGNHEFFVVAASDKFRPFYGKSLDELSPELEQRKLVQETLNAHQHVFHPNCSCLYLSTPS
CCCCEEEEEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCC
GWQGVIVAENATGLTKVDQELLQVFCLNVALGLENAKFFAHLNKAAFFDELTGLHNRAGL
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHCCCH
VEYGASFLKQFDPGAASLFMVDIDYFHQIIESLGYEFGNNILEKMSRVLRKEFSTRALIA
HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLHADVFAVLLPESKLTAHELAVRCAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLR
HHHHHHHEEECCCCCHHHHHHHHHHCCCCEECCCCEEEEEEECHHHHHHCCCCCHHHHHH
HAESALKVAKEHRRGSGETFNKRYEQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTG
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHEECCCEEEEEECCCCCEECC
AVVGYEALIRWQHPEKGNIPPGAFIPAVEKSGLYYGLDLYVARAACELMTQHPELNVPVS
HHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEE
LNISANSLHHETFVDDLKAEFLRAGVPFDRVELEITENALVHSDRAISELHRLHQSGFII
EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCEEE
CLDDFGAGFSSLGYLLRLPIQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIE
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHEEE
GVETEAQLELLKSMQVDFVQGFYFHRPLPVSEALALLEPVRSTTSYL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]