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The map label for this gene is rarD [C]

Identifier: 119773473

GI number: 119773473

Start: 398114

End: 398995

Strand: Reverse

Name: rarD [C]

Synonym: Sama_0332

Alternate gene names: 119773473

Gene position: 398995-398114 (Counterclockwise)

Preceding gene: 119773475

Following gene: 119773467

Centisome position: 9.27

GC content: 53.29

Gene sequence:

>882_bases
ATGAACACCGACCACGAATACCGCAAGGGCATATTACTCGCCATTGGCGCGTACACCATGTGGGGCTTCGCACCTTTATA
TTTCAAACTATTGGAGCAAATTTCTGCCACCGACATCCTGCTCCACCGGGTTATCTGGTCGTTTGTGTTTACCGCGTTGC
TGATGGTGTTCATCGGCGGCTTTGGCAAGCTGCGCCAACTGCTGAAGGCCCCCAAACAGCTATTGGTGTTGCTGGTTACA
TCGGTTTTGATTGCCGGTAATTGGCTGCTCTTCATCTGGGCGGTGAATAACGACCATATGTTGGATGCCAGCCTGGGTTA
TTACATCAATCCACTGCTCAATGTACTGTTAGGGATGGTGTTTCTGGGCGAACGACTCAGACCCTTACAGTGGTTTGCGG
TGTTCCTTGCCACCGTTGGCGTGACGGTGCAGGTGATATCTTTCGGTTCCATTCCCGTGGTATCGCTGGCGCTGGCAGGC
TCATTTGGCATTTATGGCCTGCTGCGAAAAAAGGTCAAGGTGGATGCCAAAACCGGACTTTTGGTAGAAACCGCCATCTT
GATGCCCGTTGCCCTGGGTTATTTGGTGCTGACGCTTGGCAGTGCAGAGCACAGCATGCTGAGCAATGACTGGCAGCTCA
ATCTGCTACTGGTCGCTGCCGGGATTGTGACCACAGCACCGCTGCTGTGCTTTGCGGGGGCGGCGGTGCGTATTCCTTTA
TCCATGCTGGGCTTTTTCCAATATATAGGCCCCAGCATTATGTTTATCCTGGCGGTCAGCCTCTATGGCGAGCCTTTTGG
CGTGGAAAAGAGCATCACCTTCGGTTTTATCTGGACGGCACTGGCGGTGTTCACACTGGACATGCTCAGGCGTCGGGGTT
GA

Upstream 100 bases:

>100_bases
AGACGATACCCTATGGGATTATTTGTATCGCTTGAGACAACAATGCCAGCCACGTACAATTCGCAGCCCGGCAGTTGCCA
ACCAGCCAGAGAACGCCTGA

Downstream 100 bases:

>100_bases
ACCAGGCAATCCAAACACCACAGCAGTAACACAAAGAAGCCCGGGATGTGACCCGGGCTTTTTACTCATCTCATCTCTGA
GCGGGGGTGGTCTCTTTACA

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNTDHEYRKGILLAIGAYTMWGFAPLYFKLLEQISATDILLHRVIWSFVFTALLMVFIGGFGKLRQLLKAPKQLLVLLVT
SVLIAGNWLLFIWAVNNDHMLDASLGYYINPLLNVLLGMVFLGERLRPLQWFAVFLATVGVTVQVISFGSIPVVSLALAG
SFGIYGLLRKKVKVDAKTGLLVETAILMPVALGYLVLTLGSAEHSMLSNDWQLNLLLVAAGIVTTAPLLCFAGAAVRIPL
SMLGFFQYIGPSIMFILAVSLYGEPFGVEKSITFGFIWTALAVFTLDMLRRRG

Sequences:

>Translated_293_residues
MNTDHEYRKGILLAIGAYTMWGFAPLYFKLLEQISATDILLHRVIWSFVFTALLMVFIGGFGKLRQLLKAPKQLLVLLVT
SVLIAGNWLLFIWAVNNDHMLDASLGYYINPLLNVLLGMVFLGERLRPLQWFAVFLATVGVTVQVISFGSIPVVSLALAG
SFGIYGLLRKKVKVDAKTGLLVETAILMPVALGYLVLTLGSAEHSMLSNDWQLNLLLVAAGIVTTAPLLCFAGAAVRIPL
SMLGFFQYIGPSIMFILAVSLYGEPFGVEKSITFGFIWTALAVFTLDMLRRRG
>Mature_293_residues
MNTDHEYRKGILLAIGAYTMWGFAPLYFKLLEQISATDILLHRVIWSFVFTALLMVFIGGFGKLRQLLKAPKQLLVLLVT
SVLIAGNWLLFIWAVNNDHMLDASLGYYINPLLNVLLGMVFLGERLRPLQWFAVFLATVGVTVQVISFGSIPVVSLALAG
SFGIYGLLRKKVKVDAKTGLLVETAILMPVALGYLVLTLGSAEHSMLSNDWQLNLLLVAAGIVTTAPLLCFAGAAVRIPL
SMLGFFQYIGPSIMFILAVSLYGEPFGVEKSITFGFIWTALAVFTLDMLRRRG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=290, Percent_Identity=56.551724137931, Blast_Score=335, Evalue=2e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32236; Mature: 32236

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDHEYRKGILLAIGAYTMWGFAPLYFKLLEQISATDILLHRVIWSFVFTALLMVFIGG
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGKLRQLLKAPKQLLVLLVTSVLIAGNWLLFIWAVNNDHMLDASLGYYINPLLNVLLGMV
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHH
FLGERLRPLQWFAVFLATVGVTVQVISFGSIPVVSLALAGSFGIYGLLRKKVKVDAKTGL
HHHHHCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
LVETAILMPVALGYLVLTLGSAEHSMLSNDWQLNLLLVAAGIVTTAPLLCFAGAAVRIPL
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHH
SMLGFFQYIGPSIMFILAVSLYGEPFGVEKSITFGFIWTALAVFTLDMLRRRG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTDHEYRKGILLAIGAYTMWGFAPLYFKLLEQISATDILLHRVIWSFVFTALLMVFIGG
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGKLRQLLKAPKQLLVLLVTSVLIAGNWLLFIWAVNNDHMLDASLGYYINPLLNVLLGMV
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHH
FLGERLRPLQWFAVFLATVGVTVQVISFGSIPVVSLALAGSFGIYGLLRKKVKVDAKTGL
HHHHHCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
LVETAILMPVALGYLVLTLGSAEHSMLSNDWQLNLLLVAAGIVTTAPLLCFAGAAVRIPL
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHH
SMLGFFQYIGPSIMFILAVSLYGEPFGVEKSITFGFIWTALAVFTLDMLRRRG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]