| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ppc [H]
Identifier: 119773395
GI number: 119773395
Start: 289851
End: 292514
Strand: Reverse
Name: ppc [H]
Synonym: Sama_0254
Alternate gene names: 119773395
Gene position: 292514-289851 (Counterclockwise)
Preceding gene: 119773396
Following gene: 119773394
Centisome position: 6.79
GC content: 58.07
Gene sequence:
>2664_bases ATGACAGACGTAAAGGGTACTGAGAAAGTAACAGACATGTACGCCCAGCTCAGGGCGAACGTGGGTATGATGGGACAAAT CCTGGGCGACACCATGAAAGAGCATTTGGGTGAAGCCTTTCTGGATAAGGTTGAGCAAATCCGCCTGCTCGCCAAGGGCA GCCGCAGCGGTGATGACGAGGCAAGGGCAAAAATGCTGGCCCTGCTCGGACAACTGCCAGATGAAGAGCTGGTCCCATTC GCCAAAGCCTTTAACCAGTTTCTGAACCTGGCCAACATTGCCGAGCAGTTCCACACCATCAGCCGTAATTGTGATGAGCT GGTGTGTGTGCCGGATCCGGTGGAACAGCTCCTTGGCAGAATGCTTGGCAGCCAGGTCGATAAAAAGGAAATGCTGGCCA CCCTCAAGACGCTGGACATAGATTTAGTATTAACGGCGCACCCTACCGAGATCAGCCGCCGCACGCTCATTCAAAAATAC TCGGCCATCGTCGATTGTTTGCATGATTTGGAAAACCCGCAGCTCACCGAGCGCGAGCATAAGAGCCAAACCCTCAGGTT GCGCCAACTGATTGCACAAATCTGGCACACCAATGAAATTCGCCGTGAGCGCCCTACTCCGGTCGACGAAGCCCGCTGGG GCCTGTCTACCATAGAGACGTCCCTGTGGCATGCGGTGCCTGACTTTCTGCGGCAGTTAAACGATCAGGTAGAAGAAGCC ACCGGCACCCAAATTCCTACCGACATGGCGCCGGTGCGCTTCTCAAGTTGGATGGGGGGGGACCGTGATGGCAACCCCTT TGTGACCGCCAGGGTCACCGCCGAAGTATTGGATCGCAATCGACACACCGCCGCGCGCCTGTATCTGAAAGATGTGGTTG AGCTGGTCGGCGAATTGTCGATGGAAGAAGCCAACGCCGAACTCATGGCCTACAGCAATAACTCTTGCGAGCCATACCGG GACGTACTGCGAAGCTTGCGCAGTAAACTGCGCAACACCATCGACTTCCTCAACGCCCGCCTCGAAGGCCACAACCCCGA AGTGGCCCGTGATGAGATAATCTGGGAACAGCAGGATCTCGAGACGCCACTCAAGTTACTGTACAAAAGTCTGTGTGACT CGGGCATGCGCCTGATTGCCAACGGCCGTCTGCTGGATATGCTGCGCCGTCTGGCCTGTTTCGGCATCCATATGCTGAGG CTGGATATTCGTCAGGACGCCGGCCGCCACGAAGCCGCCATTGCCGAGCTGACGCGCTACCTTGGTCTTGGCGATTACGC CCATTGGAGCGAAGCGGAAAAGCAAGCCTTCCTGCTGAAAGAACTCAGTGGTCGCAGACCGCTTATCCCCGGCAACTGGA AACCATCTGACGAAGTTGCCGAAGTACTGGCGACCTGCCGCCTGGTGGGCACTCAGCCCCAGCAGGCGCTAGGCTCCTAT GTAATCTCTATGGCGAGCCTGCCATCGGATGTGCTGGCAGTATTGCTGCTGCTCAAAGAGTCCGGCTGCAACTACCCCAT CCGGGTGGTCCCCCTGTTCGAGACTCTCGATGACCTGAATAATGCCGCTGCTTGCATTACCGCGCTGTTGGACATCGACT GGTACCGGGGTTACACCAAGGGCATGCAGGAAGTGATGATTGGGTACTCCGACTCCGCCAAAGATGCCGGGGTTATGGCG GCCGCCTGGGCGCAATATCGCGCTCAGGAGCAATTGGTGAAGGTATGCAACAAGGCTGGCGTTAAGCTAACCCTGTTCCA CGGCCGTGGTGGCACCATAGGTCGCGGCGGTGGCCCCGCCCATAAGGCGATTCTGTCGCAGCCGCCCGGCAGCGTCGATG GCCGTATTCGGGTAACCGAACAGGGTGAGATGATCCGCTTTAAGTTCGGTCTGCCCAAGCTCGCGGTACAATCGCTGGCA CTCTATACCTCTGCCGTGCTGGAGGCGACCTTGCTGCCCCCACCGGAGCCCAAACAGGAATGGCGCAATGCCATGCAACG CATTGCGGACGAGTCAGTAGAGGCGTATCGCGGCATAGTGCGACAAGAACCCGACTTCGTACCTTACTTCCGCGCTGCGA CTCCCGAGGTAGAACTGGGTAAGCTGCCACTGGGAAGTCGTCCTGCCAAGCGTCGCGTCGATGGAGGCATCGAGAGTCTG CGTGCCATCCCCTGGATTTTCGCCTGGTCTCAGAACCGCTTAATGCTGCCCGCCTGGCTTGGTGCAGGCGAGGCACTGAA AGCCGCCGCCGATCGTGGTGAACTTGGCCTGCTGCGGGAAATGGAACAGGACTGGCCCTTCTTCAACACCCGCATCTCCA TGCTGGAGATGGTGTACAGCAAAGCAGAACCGAATCTGGCCCGCTACTACGAGCAGTGCCTGGTGCCCGAAGCCCTGCAT CATCTGGGGGTAACCCTGCGTGAACGCCTGGCGCTTGGTGTAGAGGCGGTGCTGGCTCTCACGGGAGAAGACAGCCTGAT GGCCCATACGCCATGGAATCGCGAATCTGTGAGACTGAGAAACCCCTATATCGACCCGCTTAACTTCCTGCAGGCGGAAC TGCTTGGCCGTACCCGTCGTGAAGAAACGCCGTCGGAGTCTGTACAACTGGCACTGATGCTCACCATCGCCGGTGTTGCC GCTGGCATGAGGAACACAGGGTGA
Upstream 100 bases:
>100_bases ATTGACCCTGGTCGGTTGACCCCGAACGCAGGGCTGTTTATTGTGCTTGAACGGCTTTGGCTGACAACCCGAGAATAGTA ATCCCGCAAGTGGAGATACC
Downstream 100 bases:
>100_bases TCCGTCTACTGGCAGTTTCTGCACTACTGCTGCTGTCTGGCTGCGTTAGCCAGTACAGCATCAGTGAGGGGGAAATGGCG TCCTACCTCAATAAGGAGAT
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 887; Mature: 886
Protein sequence:
>887_residues MTDVKGTEKVTDMYAQLRANVGMMGQILGDTMKEHLGEAFLDKVEQIRLLAKGSRSGDDEARAKMLALLGQLPDEELVPF AKAFNQFLNLANIAEQFHTISRNCDELVCVPDPVEQLLGRMLGSQVDKKEMLATLKTLDIDLVLTAHPTEISRRTLIQKY SAIVDCLHDLENPQLTEREHKSQTLRLRQLIAQIWHTNEIRRERPTPVDEARWGLSTIETSLWHAVPDFLRQLNDQVEEA TGTQIPTDMAPVRFSSWMGGDRDGNPFVTARVTAEVLDRNRHTAARLYLKDVVELVGELSMEEANAELMAYSNNSCEPYR DVLRSLRSKLRNTIDFLNARLEGHNPEVARDEIIWEQQDLETPLKLLYKSLCDSGMRLIANGRLLDMLRRLACFGIHMLR LDIRQDAGRHEAAIAELTRYLGLGDYAHWSEAEKQAFLLKELSGRRPLIPGNWKPSDEVAEVLATCRLVGTQPQQALGSY VISMASLPSDVLAVLLLLKESGCNYPIRVVPLFETLDDLNNAAACITALLDIDWYRGYTKGMQEVMIGYSDSAKDAGVMA AAWAQYRAQEQLVKVCNKAGVKLTLFHGRGGTIGRGGGPAHKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLA LYTSAVLEATLLPPPEPKQEWRNAMQRIADESVEAYRGIVRQEPDFVPYFRAATPEVELGKLPLGSRPAKRRVDGGIESL RAIPWIFAWSQNRLMLPAWLGAGEALKAAADRGELGLLREMEQDWPFFNTRISMLEMVYSKAEPNLARYYEQCLVPEALH HLGVTLRERLALGVEAVLALTGEDSLMAHTPWNRESVRLRNPYIDPLNFLQAELLGRTRREETPSESVQLALMLTIAGVA AGMRNTG
Sequences:
>Translated_887_residues MTDVKGTEKVTDMYAQLRANVGMMGQILGDTMKEHLGEAFLDKVEQIRLLAKGSRSGDDEARAKMLALLGQLPDEELVPF AKAFNQFLNLANIAEQFHTISRNCDELVCVPDPVEQLLGRMLGSQVDKKEMLATLKTLDIDLVLTAHPTEISRRTLIQKY SAIVDCLHDLENPQLTEREHKSQTLRLRQLIAQIWHTNEIRRERPTPVDEARWGLSTIETSLWHAVPDFLRQLNDQVEEA TGTQIPTDMAPVRFSSWMGGDRDGNPFVTARVTAEVLDRNRHTAARLYLKDVVELVGELSMEEANAELMAYSNNSCEPYR DVLRSLRSKLRNTIDFLNARLEGHNPEVARDEIIWEQQDLETPLKLLYKSLCDSGMRLIANGRLLDMLRRLACFGIHMLR LDIRQDAGRHEAAIAELTRYLGLGDYAHWSEAEKQAFLLKELSGRRPLIPGNWKPSDEVAEVLATCRLVGTQPQQALGSY VISMASLPSDVLAVLLLLKESGCNYPIRVVPLFETLDDLNNAAACITALLDIDWYRGYTKGMQEVMIGYSDSAKDAGVMA AAWAQYRAQEQLVKVCNKAGVKLTLFHGRGGTIGRGGGPAHKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLA LYTSAVLEATLLPPPEPKQEWRNAMQRIADESVEAYRGIVRQEPDFVPYFRAATPEVELGKLPLGSRPAKRRVDGGIESL RAIPWIFAWSQNRLMLPAWLGAGEALKAAADRGELGLLREMEQDWPFFNTRISMLEMVYSKAEPNLARYYEQCLVPEALH HLGVTLRERLALGVEAVLALTGEDSLMAHTPWNRESVRLRNPYIDPLNFLQAELLGRTRREETPSESVQLALMLTIAGVA AGMRNTG >Mature_886_residues TDVKGTEKVTDMYAQLRANVGMMGQILGDTMKEHLGEAFLDKVEQIRLLAKGSRSGDDEARAKMLALLGQLPDEELVPFA KAFNQFLNLANIAEQFHTISRNCDELVCVPDPVEQLLGRMLGSQVDKKEMLATLKTLDIDLVLTAHPTEISRRTLIQKYS AIVDCLHDLENPQLTEREHKSQTLRLRQLIAQIWHTNEIRRERPTPVDEARWGLSTIETSLWHAVPDFLRQLNDQVEEAT GTQIPTDMAPVRFSSWMGGDRDGNPFVTARVTAEVLDRNRHTAARLYLKDVVELVGELSMEEANAELMAYSNNSCEPYRD VLRSLRSKLRNTIDFLNARLEGHNPEVARDEIIWEQQDLETPLKLLYKSLCDSGMRLIANGRLLDMLRRLACFGIHMLRL DIRQDAGRHEAAIAELTRYLGLGDYAHWSEAEKQAFLLKELSGRRPLIPGNWKPSDEVAEVLATCRLVGTQPQQALGSYV ISMASLPSDVLAVLLLLKESGCNYPIRVVPLFETLDDLNNAAACITALLDIDWYRGYTKGMQEVMIGYSDSAKDAGVMAA AWAQYRAQEQLVKVCNKAGVKLTLFHGRGGTIGRGGGPAHKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLAL YTSAVLEATLLPPPEPKQEWRNAMQRIADESVEAYRGIVRQEPDFVPYFRAATPEVELGKLPLGSRPAKRRVDGGIESLR AIPWIFAWSQNRLMLPAWLGAGEALKAAADRGELGLLREMEQDWPFFNTRISMLEMVYSKAEPNLARYYEQCLVPEALHH LGVTLRERLALGVEAVLALTGEDSLMAHTPWNRESVRLRNPYIDPLNFLQAELLGRTRREETPSESVQLALMLTIAGVAA GMRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=891, Percent_Identity=56.9023569023569, Blast_Score=984, Evalue=0.0,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 99322; Mature: 99191
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVKGTEKVTDMYAQLRANVGMMGQILGDTMKEHLGEAFLDKVEQIRLLAKGSRSGDDE CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH ARAKMLALLGQLPDEELVPFAKAFNQFLNLANIAEQFHTISRNCDELVCVPDPVEQLLGR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHH MLGSQVDKKEMLATLKTLDIDLVLTAHPTEISRRTLIQKYSAIVDCLHDLENPQLTEREH HHCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH KSQTLRLRQLIAQIWHTNEIRRERPTPVDEARWGLSTIETSLWHAVPDFLRQLNDQVEEA HHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH TGTQIPTDMAPVRFSSWMGGDRDGNPFVTARVTAEVLDRNRHTAARLYLKDVVELVGELS CCCCCCCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH MEEANAELMAYSNNSCEPYRDVLRSLRSKLRNTIDFLNARLEGHNPEVARDEIIWEQQDL HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHH ETPLKLLYKSLCDSGMRLIANGRLLDMLRRLACFGIHMLRLDIRQDAGRHEAAIAELTRY HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LGLGDYAHWSEAEKQAFLLKELSGRRPLIPGNWKPSDEVAEVLATCRLVGTQPQQALGSY HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH VISMASLPSDVLAVLLLLKESGCNYPIRVVPLFETLDDLNNAAACITALLDIDWYRGYTK HHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMQEVMIGYSDSAKDAGVMAAAWAQYRAQEQLVKVCNKAGVKLTLFHGRGGTIGRGGGPA HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH HKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVLEATLLPPPEPKQE HHHHHCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH WRNAMQRIADESVEAYRGIVRQEPDFVPYFRAATPEVELGKLPLGSRPAKRRVDGGIESL HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHH RAIPWIFAWSQNRLMLPAWLGAGEALKAAADRGELGLLREMEQDWPFFNTRISMLEMVYS HHHHEEEEECCCCEEEEHHCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH KAEPNLARYYEQCLVPEALHHLGVTLRERLALGVEAVLALTGEDSLMAHTPWNRESVRLR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEC NPYIDPLNFLQAELLGRTRREETPSESVQLALMLTIAGVAAGMRNTG CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TDVKGTEKVTDMYAQLRANVGMMGQILGDTMKEHLGEAFLDKVEQIRLLAKGSRSGDDE CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH ARAKMLALLGQLPDEELVPFAKAFNQFLNLANIAEQFHTISRNCDELVCVPDPVEQLLGR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHH MLGSQVDKKEMLATLKTLDIDLVLTAHPTEISRRTLIQKYSAIVDCLHDLENPQLTEREH HHCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH KSQTLRLRQLIAQIWHTNEIRRERPTPVDEARWGLSTIETSLWHAVPDFLRQLNDQVEEA HHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH TGTQIPTDMAPVRFSSWMGGDRDGNPFVTARVTAEVLDRNRHTAARLYLKDVVELVGELS CCCCCCCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH MEEANAELMAYSNNSCEPYRDVLRSLRSKLRNTIDFLNARLEGHNPEVARDEIIWEQQDL HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHH ETPLKLLYKSLCDSGMRLIANGRLLDMLRRLACFGIHMLRLDIRQDAGRHEAAIAELTRY HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LGLGDYAHWSEAEKQAFLLKELSGRRPLIPGNWKPSDEVAEVLATCRLVGTQPQQALGSY HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH VISMASLPSDVLAVLLLLKESGCNYPIRVVPLFETLDDLNNAAACITALLDIDWYRGYTK HHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMQEVMIGYSDSAKDAGVMAAAWAQYRAQEQLVKVCNKAGVKLTLFHGRGGTIGRGGGPA HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH HKAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVLEATLLPPPEPKQE HHHHHCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH WRNAMQRIADESVEAYRGIVRQEPDFVPYFRAATPEVELGKLPLGSRPAKRRVDGGIESL HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHH RAIPWIFAWSQNRLMLPAWLGAGEALKAAADRGELGLLREMEQDWPFFNTRISMLEMVYS HHHHEEEEECCCCEEEEHHCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH KAEPNLARYYEQCLVPEALHHLGVTLRERLALGVEAVLALTGEDSLMAHTPWNRESVRLR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEC NPYIDPLNFLQAELLGRTRREETPSESVQLALMLTIAGVAAGMRNTG CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]