| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cysQ [H]
Identifier: 119773325
GI number: 119773325
Start: 211849
End: 212661
Strand: Direct
Name: cysQ [H]
Synonym: Sama_0184
Alternate gene names: 119773325
Gene position: 211849-212661 (Clockwise)
Preceding gene: 119773324
Following gene: 119773326
Centisome position: 4.92
GC content: 53.51
Gene sequence:
>813_bases ATGAAGCCAGAACAATTGGTCGACGAGGCAATTGCCATTGCGACCCAGGCAGGAAACAAGATCCGGGAAATTTATCTGGC CGGTGATTTCGAACGGATCGTGAAATCCGATAATACCCCTGTCACTTCTGCCGATCTTGCCGCGAATCAAATCATTATGG ATGGGCTGAGGCAACTGACGCCCCATATCCCCATTTTATCGGAAGAAGCCGCCGATATTCCCCTGTGTGAGCGCGTCGAC TGGCCTTGTTATTGGCTTGTGGATCCCCTCGATGGTACAGGCGAATTTATTGCAGGCAGTGGTGATTTTTCAGTCATTAT CGCGCTGGTTGAGCATAACCGCCCCGTTATGGGGGTGGTGTACGTGCCCATGACCGGAGTGTGTTATTACGCCGTGGCGG GCCTCGGTGCATACAAACGCAGTGGTGGTATGGAGGTCAGGATCACCAGTCGCCAGCTGCCCTCCGGTGTTGAACCCTCG CTGAGACTGGCCGTGAGCCGCCGTCAGGACCCCCAATCTGTATTGAAGCTATTTCATCAGCCCCGCCATTGTGAGTTGGT GGTGATGGGGGGCGCTGCGCTGAAAAGCTGTTTGGTGGCCGAAGGCCGTGCCGATTGTTATGTTCGGGTAGGTCCCACGG GAGAGTGGGACACAGGGGCTGCGCAGATCATCATCGAAGAGGCCGGAGGCCAATTGATGGACATAGAACTGCAACCCCTC AGTTATAACGAACGTGACACCTTTGAAAATCCCAATTTTGTGGTGGTAGGTTCGCCTAATCTCGATTGGGATAAAATTCT TGTTGGTGAATAA
Upstream 100 bases:
>100_bases AATCCCGCAGCGTCAGTGCTTTGTTTTTGGCGCAAAAGCATCTACACCTTAAATAGATAGTTCCGGGCCCCGTGAGGCAG TGCCCCCTTCTGGAGTGGTT
Downstream 100 bases:
>100_bases TACTTTGCAAATTCAATCTCTCTCTGCTTCCGACTGGCAGGATGCCTATCATGTCGAGCGTACCTGCTTTGGTTCTCATG CCTACCCCGACTTTTTCTTT
Product: cysQ protein
Products: NA
Alternate protein names: 3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase; 3'-phosphoadenosine 5'-phosphate phosphatase; PAP phosphatase; DPNPase [H]
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MKPEQLVDEAIAIATQAGNKIREIYLAGDFERIVKSDNTPVTSADLAANQIIMDGLRQLTPHIPILSEEAADIPLCERVD WPCYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPVMGVVYVPMTGVCYYAVAGLGAYKRSGGMEVRITSRQLPSGVEPS LRLAVSRRQDPQSVLKLFHQPRHCELVVMGGAALKSCLVAEGRADCYVRVGPTGEWDTGAAQIIIEEAGGQLMDIELQPL SYNERDTFENPNFVVVGSPNLDWDKILVGE
Sequences:
>Translated_270_residues MKPEQLVDEAIAIATQAGNKIREIYLAGDFERIVKSDNTPVTSADLAANQIIMDGLRQLTPHIPILSEEAADIPLCERVD WPCYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPVMGVVYVPMTGVCYYAVAGLGAYKRSGGMEVRITSRQLPSGVEPS LRLAVSRRQDPQSVLKLFHQPRHCELVVMGGAALKSCLVAEGRADCYVRVGPTGEWDTGAAQIIIEEAGGQLMDIELQPL SYNERDTFENPNFVVVGSPNLDWDKILVGE >Mature_270_residues MKPEQLVDEAIAIATQAGNKIREIYLAGDFERIVKSDNTPVTSADLAANQIIMDGLRQLTPHIPILSEEAADIPLCERVD WPCYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPVMGVVYVPMTGVCYYAVAGLGAYKRSGGMEVRITSRQLPSGVEPS LRLAVSRRQDPQSVLKLFHQPRHCELVVMGGAALKSCLVAEGRADCYVRVGPTGEWDTGAAQIIIEEAGGQLMDIELQPL SYNERDTFENPNFVVVGSPNLDWDKILVGE
Specific function: Converts 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP. May also convert adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) [H]
COG id: COG1218
COG function: function code P; 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
Gene ontology:
Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the inositol monophosphatase family [H]
Homologues:
Organism=Homo sapiens, GI221625487, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI5031789, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI116812595, Length=296, Percent_Identity=27.3648648648649, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7657236, Length=247, Percent_Identity=29.5546558704453, Blast_Score=76, Evalue=3e-14, Organism=Escherichia coli, GI1790659, Length=252, Percent_Identity=42.4603174603175, Blast_Score=176, Evalue=1e-45, Organism=Escherichia coli, GI1788882, Length=235, Percent_Identity=31.063829787234, Blast_Score=94, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193202572, Length=247, Percent_Identity=29.5546558704453, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193202570, Length=250, Percent_Identity=29.2, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71995897, Length=242, Percent_Identity=26.4462809917355, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71995905, Length=242, Percent_Identity=26.4462809917355, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17537869, Length=281, Percent_Identity=26.6903914590747, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24664922, Length=266, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24664926, Length=196, Percent_Identity=30.1020408163265, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357329, Length=240, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006240 - InterPro: IPR020583 - InterPro: IPR000760 - InterPro: IPR020550 [H]
Pfam domain/function: PF00459 Inositol_P [H]
EC number: =3.1.3.7 [H]
Molecular weight: Translated: 29467; Mature: 29467
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEQLVDEAIAIATQAGNKIREIYLAGDFERIVKSDNTPVTSADLAANQIIMDGLRQLT CCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC PHIPILSEEAADIPLCERVDWPCYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPVMGVV CCCCEECCCCCCCCCHHCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCEEEEE YVPMTGVCYYAVAGLGAYKRSGGMEVRITSRQLPSGVEPSLRLAVSRRQDPQSVLKLFHQ ECCCCHHHHHHHHCCCCHHCCCCEEEEEECCCCCCCCCHHHEEEECCCCCHHHHHHHHCC PRHCELVVMGGAALKSCLVAEGRADCYVRVGPTGEWDTGAAQIIIEEAGGQLMDIELQPL CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCC SYNERDTFENPNFVVVGSPNLDWDKILVGE CCCCCCCCCCCCEEEEECCCCCCCEEEECC >Mature Secondary Structure MKPEQLVDEAIAIATQAGNKIREIYLAGDFERIVKSDNTPVTSADLAANQIIMDGLRQLT CCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC PHIPILSEEAADIPLCERVDWPCYWLVDPLDGTGEFIAGSGDFSVIIALVEHNRPVMGVV CCCCEECCCCCCCCCHHCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCEEEEE YVPMTGVCYYAVAGLGAYKRSGGMEVRITSRQLPSGVEPSLRLAVSRRQDPQSVLKLFHQ ECCCCHHHHHHHHCCCCHHCCCCEEEEEECCCCCCCCCHHHEEEECCCCCHHHHHHHHCC PRHCELVVMGGAALKSCLVAEGRADCYVRVGPTGEWDTGAAQIIIEEAGGQLMDIELQPL CCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCC SYNERDTFENPNFVVVGSPNLDWDKILVGE CCCCCCCCCCCCEEEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9020051 [H]