Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773295

Identifier: 119773295

GI number: 119773295

Start: 179654

End: 180034

Strand: Direct

Name: 119773295

Synonym: Sama_0153

Alternate gene names: NA

Gene position: 179654-180034 (Clockwise)

Preceding gene: 119773294

Following gene: 119773296

Centisome position: 4.17

GC content: 55.91

Gene sequence:

>381_bases
ATGCAGCACCGCAAAGTAGTCTCAGCTCTGTTACTTTGTGCAATAGCCACAGTCGCACCACCTGCATGGGCAATAGCACT
GTTTGAGCTCACTCCAAGCCAATGTGCTGTTGACGAGGGCGATTGTAGCGTCAGGGTTACTCTGGCCTGGCAGGCCGAAG
TGCAGCAAAGCGTCTGCATTGAGGTGCTTGGCGAGAGTGAGGCGCTTTACTGCGATCTTCCCGCCAGCCACACTGCCTGG
TCACTGGATATCAGCAGTAGCAGCGATGTGGAGTTTCGCCTGCTCGGTCAGGATAACTTGCCCCTTGCCAGCGTCAGTCT
CCGGGTGCTGCATATCCCTAAACGAAAACCCCGACAAAGAGCGGCCTGGAGCCTGTTTTGA

Upstream 100 bases:

>100_bases
TTCGCTATCAGTGGCTTGGCAGCAGCATCAGCGATAGCCCTTTGGTGGAAGACAAGGCAGTAGTCTCTGCATTTATTGGC
GTTGCCTGGGGCTTCTGAAC

Downstream 100 bases:

>100_bases
TGCAAGCCAAAATCCTCTACATCGAAGATGACCATAAACTTGCCGGGTTGGTAAAGAACTTTCTGCAGTCCCATGGTTTT
GAGGTGACACACCTGCCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MQHRKVVSALLLCAIATVAPPAWAIALFELTPSQCAVDEGDCSVRVTLAWQAEVQQSVCIEVLGESEALYCDLPASHTAW
SLDISSSSDVEFRLLGQDNLPLASVSLRVLHIPKRKPRQRAAWSLF

Sequences:

>Translated_126_residues
MQHRKVVSALLLCAIATVAPPAWAIALFELTPSQCAVDEGDCSVRVTLAWQAEVQQSVCIEVLGESEALYCDLPASHTAW
SLDISSSSDVEFRLLGQDNLPLASVSLRVLHIPKRKPRQRAAWSLF
>Mature_126_residues
MQHRKVVSALLLCAIATVAPPAWAIALFELTPSQCAVDEGDCSVRVTLAWQAEVQQSVCIEVLGESEALYCDLPASHTAW
SLDISSSSDVEFRLLGQDNLPLASVSLRVLHIPKRKPRQRAAWSLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13800; Mature: 13800

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRKVVSALLLCAIATVAPPAWAIALFELTPSQCAVDEGDCSVRVTLAWQAEVQQSVCI
CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHH
EVLGESEALYCDLPASHTAWSLDISSSSDVEFRLLGQDNLPLASVSLRVLHIPKRKPRQR
HCCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCEEHEEEEEEECCCCCCCCC
AAWSLF
CCCCCC
>Mature Secondary Structure
MQHRKVVSALLLCAIATVAPPAWAIALFELTPSQCAVDEGDCSVRVTLAWQAEVQQSVCI
CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHH
EVLGESEALYCDLPASHTAWSLDISSSSDVEFRLLGQDNLPLASVSLRVLHIPKRKPRQR
HCCCCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCEEHEEEEEEECCCCCCCCC
AAWSLF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA