| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773294
Identifier: 119773294
GI number: 119773294
Start: 178728
End: 179651
Strand: Direct
Name: 119773294
Synonym: Sama_0152
Alternate gene names: NA
Gene position: 178728-179651 (Clockwise)
Preceding gene: 119773293
Following gene: 119773295
Centisome position: 4.15
GC content: 52.38
Gene sequence:
>924_bases GTGCGAAAAATAAACATTCTCAAAAATCCATTCTGTCACGTTCGTATTGCCCACGGCATCAATATCTGCCGGGCAATACT CCTGGGTCTTGGCTTGCTGTTTTGTTCTGTTATTGATGCAGGAGAGCTGGCCGAAGACATCTATACCGAAGACGAAGGCT GGCACCTGGGCGTGGCCATAGGCTATGGCACTGTGACCAATCCTTTGTACAACAAGCGCAATATTCCCCTCTATCTGGTG CCCAAAGTTGAATATTTTAATGGCGATTTTGCCTGGACCAACACCCAGCTGAGTTGGACACCAATACAAAGCGCCTGGGG TAATCTCGCCCTTATCAGCCAATTCAATGAAGACGGGTTGTATTTTTTTGATAACAGGTACAATGCCGGGATGTTGCTGC CGCTGGCCAGGCCGCCCCAATCTCCCAATACCGGTGGTGTTGTGCCCGTCGATACCAGCGTCCGCCGGGGAGACATTTCG CAAATTGCCGACCGCAAGCTGTCTTACATGGCCGGTGCCAGCTGGACCCTGAATCTCGAAAGCTGGCATTTTTCCTTCCT GGCCGTTACAGATGTGACCGGCGTGCATGAGGGATTTGAGGCCTTTGGCCGCGGGGAATACCTGCTTCAGTGGGGTAGCC ACCAGTTTGCGCTGGGGGGCGAACTGCAATACCAAAACGACCAACTGGTGGACTATTACTATGGCACCCGGTTACAGGAT CGCATCAAGGGGTTCAGTCGCTACGAGACCGACTACAGCCTCAACAGCGCCCTCAAGCTGCGCTATCAATATCATTGGAC AGACAGCCTAAGGTTGATAAGTGACTTTCGCTATCAGTGGCTTGGCAGCAGCATCAGCGATAGCCCTTTGGTGGAAGACA AGGCAGTAGTCTCTGCATTTATTGGCGTTGCCTGGGGCTTCTGA
Upstream 100 bases:
>100_bases CAAAGACGGCGGGTAGCTGCTTAACCTGGCCATTAAGCCCGGCAACGCCGGGCTTAATTTTACCGTACGAATGTGGCAGA ATCGCCAGCGAGGTAGTAAT
Downstream 100 bases:
>100_bases ACATGCAGCACCGCAAAGTAGTCTCAGCTCTGTTACTTTGTGCAATAGCCACAGTCGCACCACCTGCATGGGCAATAGCA CTGTTTGAGCTCACTCCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: MltA-Interacting MipA; Outer Membrane Protein; MltA-Interacting Protein; Outer Membrane Protein V-Like Protein; MltA-Interacting Protein MipA Superfamily
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MRKINILKNPFCHVRIAHGINICRAILLGLGLLFCSVIDAGELAEDIYTEDEGWHLGVAIGYGTVTNPLYNKRNIPLYLV PKVEYFNGDFAWTNTQLSWTPIQSAWGNLALISQFNEDGLYFFDNRYNAGMLLPLARPPQSPNTGGVVPVDTSVRRGDIS QIADRKLSYMAGASWTLNLESWHFSFLAVTDVTGVHEGFEAFGRGEYLLQWGSHQFALGGELQYQNDQLVDYYYGTRLQD RIKGFSRYETDYSLNSALKLRYQYHWTDSLRLISDFRYQWLGSSISDSPLVEDKAVVSAFIGVAWGF
Sequences:
>Translated_307_residues MRKINILKNPFCHVRIAHGINICRAILLGLGLLFCSVIDAGELAEDIYTEDEGWHLGVAIGYGTVTNPLYNKRNIPLYLV PKVEYFNGDFAWTNTQLSWTPIQSAWGNLALISQFNEDGLYFFDNRYNAGMLLPLARPPQSPNTGGVVPVDTSVRRGDIS QIADRKLSYMAGASWTLNLESWHFSFLAVTDVTGVHEGFEAFGRGEYLLQWGSHQFALGGELQYQNDQLVDYYYGTRLQD RIKGFSRYETDYSLNSALKLRYQYHWTDSLRLISDFRYQWLGSSISDSPLVEDKAVVSAFIGVAWGF >Mature_307_residues MRKINILKNPFCHVRIAHGINICRAILLGLGLLFCSVIDAGELAEDIYTEDEGWHLGVAIGYGTVTNPLYNKRNIPLYLV PKVEYFNGDFAWTNTQLSWTPIQSAWGNLALISQFNEDGLYFFDNRYNAGMLLPLARPPQSPNTGGVVPVDTSVRRGDIS QIADRKLSYMAGASWTLNLESWHFSFLAVTDVTGVHEGFEAFGRGEYLLQWGSHQFALGGELQYQNDQLVDYYYGTRLQD RIKGFSRYETDYSLNSALKLRYQYHWTDSLRLISDFRYQWLGSSISDSPLVEDKAVVSAFIGVAWGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34802; Mature: 34802
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKINILKNPFCHVRIAHGINICRAILLGLGLLFCSVIDAGELAEDIYTEDEGWHLGVAI CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEE GYGTVTNPLYNKRNIPLYLVPKVEYFNGDFAWTNTQLSWTPIQSAWGNLALISQFNEDGL ECCCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCEEEEEEHHHCCCCEEEEEEECCCCE YFFDNRYNAGMLLPLARPPQSPNTGGVVPVDTSVRRGDISQIADRKLSYMAGASWTLNLE EEEECCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC SWHFSFLAVTDVTGVHEGFEAFGRGEYLLQWGSHQFALGGELQYQNDQLVDYYYGTRLQD CEEEEEEEEECCCHHHHHHHHHCCCCEEEEECCEEEEECCEEEECCCCEEEEECCCCHHH RIKGFSRYETDYSLNSALKLRYQYHWTDSLRLISDFRYQWLGSSISDSPLVEDKAVVSAF HHCCHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH IGVAWGF HHHHCCC >Mature Secondary Structure MRKINILKNPFCHVRIAHGINICRAILLGLGLLFCSVIDAGELAEDIYTEDEGWHLGVAI CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEE GYGTVTNPLYNKRNIPLYLVPKVEYFNGDFAWTNTQLSWTPIQSAWGNLALISQFNEDGL ECCCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCEEEEEEHHHCCCCEEEEEEECCCCE YFFDNRYNAGMLLPLARPPQSPNTGGVVPVDTSVRRGDISQIADRKLSYMAGASWTLNLE EEEECCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC SWHFSFLAVTDVTGVHEGFEAFGRGEYLLQWGSHQFALGGELQYQNDQLVDYYYGTRLQD CEEEEEEEEECCCHHHHHHHHHCCCCEEEEECCEEEEECCEEEECCCCEEEEECCCCHHH RIKGFSRYETDYSLNSALKLRYQYHWTDSLRLISDFRYQWLGSSISDSPLVEDKAVVSAF HHCCHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH IGVAWGF HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA