Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773292

Identifier: 119773292

GI number: 119773292

Start: 172620

End: 173411

Strand: Direct

Name: 119773292

Synonym: Sama_0150

Alternate gene names: NA

Gene position: 172620-173411 (Clockwise)

Preceding gene: 119773291

Following gene: 119773293

Centisome position: 4.01

GC content: 54.29

Gene sequence:

>792_bases
ATGGACGACTTCCTCACTATCAATCAGCACGCTTGGGATAACCGTACCGAGCTGCATCTCGAGTCCGACTTTTACGATAT
GCCCGGTTTTATGGCGGGTAACACCAGCTTGCGCGAAATTGAACTTGCCGAGCTGGATGTGCGAGGTAAAAGTTTGCTCC
ACCTGCAGTGTCACTTCGGTCAGGATACCCTGTCATGGGCCCGTGAAGGCGCCGCTTCGGTCACTGGTCTGGACCTGTCT
CCCAAGGCCATTGCCGCCGCAACCCAAATTGCAGATACGCTCGATATCGAGGCGAAATTGGGTGTACCCGTGCAGTTTGT
GTGTGGCAATGTGCTGGATGCCCGCAATCTCGTTGAGGGCGATTTCGACCTGGTCTATGCCTCCTACGGCGTGCTTTGCT
GGCTGCCGGATTTAACTGTCTGGGCCAATACCATTGCTTCCTGCCTCAAGCCCGGGGGCTATTTTTATCTCGCGGAGTTT
CATCCCATCAAGGCGCTGCTCGATGGTTATGATTACTTCTATACCGGCAAGGCTGATGTGGAGCAAGAGGGCAGTTACAC
AGAAAACAGCCGTGACGCCGAAAACACCATGGTCAGTTGGTCGCACGATCTGGGGCAGGTGGTATCGGCACTGATTAACG
CTGGATTGGTGATAGAGTCGCTGCGGGAATATGACTTCAGCCCCTATAACTGCTTCGAAAACCTCGAAGAAGAGGAGCCC
GGCCGTTTTCGCCAGCGTATCGATGGCAAACCCATTCCACTGGTGTTTTCCATCAAGGCCCGTAAGCCCTGA

Upstream 100 bases:

>100_bases
AGAGTGCTGATAGGACGCAGTGCAAATCAAAGCTGGTGTTGAGCAGCCAAGGGGCTTATGGTTGACAGCACATATCGCTT
ACCAGCTTTGATTACTTATC

Downstream 100 bases:

>100_bases
GCCGTTCGGGGCTGGTTACTGCCCATTGCCCGAGATTGTATTTCAGTACGGCGCCGGGCTTCGTTTGATTCAGCCCATCC
TTTCCCAGCAATAAGCACTC

Product: putative SAM-dependent methyltransferase

Products: NA

Alternate protein names: SAM-Dependent Methyltransferase; Methyltransferase Family Protein; Ubiquinone/Menaquinone Biosynthesis Methyltransferase Ubie; Methyltransferase; Methyltransferase Domain Protein; Sam Dependent Methyltransferase

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDDFLTINQHAWDNRTELHLESDFYDMPGFMAGNTSLREIELAELDVRGKSLLHLQCHFGQDTLSWAREGAASVTGLDLS
PKAIAAATQIADTLDIEAKLGVPVQFVCGNVLDARNLVEGDFDLVYASYGVLCWLPDLTVWANTIASCLKPGGYFYLAEF
HPIKALLDGYDYFYTGKADVEQEGSYTENSRDAENTMVSWSHDLGQVVSALINAGLVIESLREYDFSPYNCFENLEEEEP
GRFRQRIDGKPIPLVFSIKARKP

Sequences:

>Translated_263_residues
MDDFLTINQHAWDNRTELHLESDFYDMPGFMAGNTSLREIELAELDVRGKSLLHLQCHFGQDTLSWAREGAASVTGLDLS
PKAIAAATQIADTLDIEAKLGVPVQFVCGNVLDARNLVEGDFDLVYASYGVLCWLPDLTVWANTIASCLKPGGYFYLAEF
HPIKALLDGYDYFYTGKADVEQEGSYTENSRDAENTMVSWSHDLGQVVSALINAGLVIESLREYDFSPYNCFENLEEEEP
GRFRQRIDGKPIPLVFSIKARKP
>Mature_263_residues
MDDFLTINQHAWDNRTELHLESDFYDMPGFMAGNTSLREIELAELDVRGKSLLHLQCHFGQDTLSWAREGAASVTGLDLS
PKAIAAATQIADTLDIEAKLGVPVQFVCGNVLDARNLVEGDFDLVYASYGVLCWLPDLTVWANTIASCLKPGGYFYLAEF
HPIKALLDGYDYFYTGKADVEQEGSYTENSRDAENTMVSWSHDLGQVVSALINAGLVIESLREYDFSPYNCFENLEEEEP
GRFRQRIDGKPIPLVFSIKARKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29404; Mature: 29404

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDFLTINQHAWDNRTELHLESDFYDMPGFMAGNTSLREIELAELDVRGKSLLHLQCHFG
CCCCEECCCCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECC
QDTLSWAREGAASVTGLDLSPKAIAAATQIADTLDIEAKLGVPVQFVCGNVLDARNLVEG
CHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHCCHHHHHHHCCC
DFDLVYASYGVLCWLPDLTVWANTIASCLKPGGYFYLAEFHPIKALLDGYDYFYTGKADV
CHHEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEEECCCCCC
EQEGSYTENSRDAENTMVSWSHDLGQVVSALINAGLVIESLREYDFSPYNCFENLEEEEP
CCCCCCCCCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
GRFRQRIDGKPIPLVFSIKARKP
HHHHHHCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MDDFLTINQHAWDNRTELHLESDFYDMPGFMAGNTSLREIELAELDVRGKSLLHLQCHFG
CCCCEECCCCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECC
QDTLSWAREGAASVTGLDLSPKAIAAATQIADTLDIEAKLGVPVQFVCGNVLDARNLVEG
CHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHCCHHHHHHHCCC
DFDLVYASYGVLCWLPDLTVWANTIASCLKPGGYFYLAEFHPIKALLDGYDYFYTGKADV
CHHEEEECCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCEEECCCCCC
EQEGSYTENSRDAENTMVSWSHDLGQVVSALINAGLVIESLREYDFSPYNCFENLEEEEP
CCCCCCCCCCCCHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
GRFRQRIDGKPIPLVFSIKARKP
HHHHHHCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA