| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773276
Identifier: 119773276
GI number: 119773276
Start: 151023
End: 151580
Strand: Direct
Name: 119773276
Synonym: Sama_0134
Alternate gene names: NA
Gene position: 151023-151580 (Clockwise)
Preceding gene: 119773275
Following gene: 119773277
Centisome position: 3.51
GC content: 60.57
Gene sequence:
>558_bases ATGAAGACTGAATTGGGTTTACAACAGGCGCTGTTTATCGGCTTCTGTGCTGCCCTGATGATTGCCCTCAAGAGCATGTT GAGGCTCAAACTGGGGTTATCCGGTCACTCCATGCTGCTGATGAGCTTTTTCTACCTGCTTTGTCACCTGGTGGTGGCGC GTCCCGGCGCCATGCTGGCCTGCGGCATGCTGTCTGGGCTGCTCGCGATGATGCTGGGTGTGGGTAAATCGGGTGTGTTG CTGCTGGTGAAATTTGGCGCGCCTGCGGCGGCCATGGAGCTGATGGCGTTGATGTTGCCTGCCATCAAGCCCGGCAATCG CATGGCCGGGCTTTACCTGCGCCTTGGCCTGCTGGCGTTTGCCGGTGCGCTGGCCTGGGGCCTCAGGGATGTGGCGGGTA CCTTGCTCGCGGGTATGGCGCTGCCTGCCGCCTTACTGGCCGGTGCCATGGAGTTTGCCGGTGGATTTGTGTTTGCCCTG CTGGGCGCAGCCCTTATTCCGCCGGTTATCCGGCGCCTCAAGGCCCATGATCTTATTGCTTCGTCGGAGGAACCCTGA
Upstream 100 bases:
>100_bases GAATTGTTGAAATTATCCCGGCGTCAGGCACTGGCTGCGAAGAGTCGCGGTTTTGGTCAGAGTGCCAATCCCAGTCACTG GCCCCATAGAGGAAAGCAAT
Downstream 100 bases:
>100_bases TGTCGACTTTGCCCCAATACCTCATTGCCATTGATGACACAGACGATATCGGCACCCGTGGCACGGGGGACATAGCCCAG CAGCTTGGAGAGATACTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MKTELGLQQALFIGFCAALMIALKSMLRLKLGLSGHSMLLMSFFYLLCHLVVARPGAMLACGMLSGLLAMMLGVGKSGVL LLVKFGAPAAAMELMALMLPAIKPGNRMAGLYLRLGLLAFAGALAWGLRDVAGTLLAGMALPAALLAGAMEFAGGFVFAL LGAALIPPVIRRLKAHDLIASSEEP
Sequences:
>Translated_185_residues MKTELGLQQALFIGFCAALMIALKSMLRLKLGLSGHSMLLMSFFYLLCHLVVARPGAMLACGMLSGLLAMMLGVGKSGVL LLVKFGAPAAAMELMALMLPAIKPGNRMAGLYLRLGLLAFAGALAWGLRDVAGTLLAGMALPAALLAGAMEFAGGFVFAL LGAALIPPVIRRLKAHDLIASSEEP >Mature_185_residues MKTELGLQQALFIGFCAALMIALKSMLRLKLGLSGHSMLLMSFFYLLCHLVVARPGAMLACGMLSGLLAMMLGVGKSGVL LLVKFGAPAAAMELMALMLPAIKPGNRMAGLYLRLGLLAFAGALAWGLRDVAGTLLAGMALPAALLAGAMEFAGGFVFAL LGAALIPPVIRRLKAHDLIASSEEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19211; Mature: 19211
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 8.1 %Met (Translated Protein) 9.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 8.1 %Met (Mature Protein) 9.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTELGLQQALFIGFCAALMIALKSMLRLKLGLSGHSMLLMSFFYLLCHLVVARPGAMLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHH CGMLSGLLAMMLGVGKSGVLLLVKFGAPAAAMELMALMLPAIKPGNRMAGLYLRLGLLAF HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AGALAWGLRDVAGTLLAGMALPAALLAGAMEFAGGFVFALLGAALIPPVIRRLKAHDLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSEEP CCCCC >Mature Secondary Structure MKTELGLQQALFIGFCAALMIALKSMLRLKLGLSGHSMLLMSFFYLLCHLVVARPGAMLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHH CGMLSGLLAMMLGVGKSGVLLLVKFGAPAAAMELMALMLPAIKPGNRMAGLYLRLGLLAF HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AGALAWGLRDVAGTLLAGMALPAALLAGAMEFAGGFVFALLGAALIPPVIRRLKAHDLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSEEP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA