| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773266
Identifier: 119773266
GI number: 119773266
Start: 137358
End: 138170
Strand: Reverse
Name: 119773266
Synonym: Sama_0124
Alternate gene names: NA
Gene position: 138170-137358 (Counterclockwise)
Preceding gene: 119773269
Following gene: 119773265
Centisome position: 3.21
GC content: 54.24
Gene sequence:
>813_bases ATGTTCAACACCAAACATATTCTGGGCGCGGCCCTGACGGCCACCCTGCTGAGTATTACACCGGTACAGGCCGAGGAAGT GATTAAGCTGGCCACAACCACCAGCACCGAAAACTCAGGCCTGCTCAAAGAGCTGCTGCCCACCTTTGAAGCTCAAAGCG GCTACAAGGTACAGGTTATCGCTACGGGTACCGGTAAAGCGCTGGCGCTGGGACGTCAGGGTGATGTTGACCTGGTGATG ACCCACGCCCCCGCCGCCGAAGCCAAGTTTGTTGAAGAAGGCTACGGCAGCGAACCTCGCGGCATTATGGAAAACGATTT TGTGGTGCTCGGCCCCAAGAACGACCCGGCCAAAATCAAGGGCAGCGCCAGCGCCGAAGAAGCATTCGGTAAAATTGCTG CCGCCGGCGTACCTTTTATTTCCCGTGGCGATGATTCAGGCACCCACAAGAAAGAACTGAAAATTTGGCAAGCCGCCAAT GTAAAGCCTGAGTTCAAGGGGTACACCTCAGTGGGTCAGGGCATGGGTAAGACCCTGCTGATGACCAACGAACTGCAAGG CTACACCCTGACTGACCGTGGTACTTACATCGCGTACAAGGGCAAACTGGATCTGGATGTGGACTTTGAAGGCGGCGCCA CTCTGGCTAACCCCTATCAGGTGATCCTGATTAACTCCGCCAAATATCCCAATCTGAATCACAAGGGTGCCAAAGCCCTG AGTGACTGGCTGATCAGCGCCGAAGGACAGAAGATGATCAATGACTTTAAAGTTCAGGGAGAGCAGCTCTTCAAGGCCAC TTATCGTCAATGA
Upstream 100 bases:
>100_bases TATTCTTTGGCACTCAAATTGCTAATAGGTATGGCGCTAATTGCCCGCAATGTCTGTCGGGCCCGATATCAAGGCGACAA AATAAAGCCAAGGAGAAAGC
Downstream 100 bases:
>100_bases GTCAAAGTTGGTTTGAACTGATACAGCAGGCCCTGGGCCTGCTGTTTTCCCTCGACAAAGATCTCTGGTCGATTATCTGG GTGTCTTTTGGCGTTTCCCT
Product: putative sulfate transport system substrate-binding protein
Products: NA
Alternate protein names: Signal Peptide Protein; TUNGstate ABC Transporter Permease; Molybdate Or TUNGstate Transport; TUNGstate ABC Transporter Permease-Like Protein; ABC TUNGstate Transporter Permease Component; ABC-Type Transport System Permease Component; ABC Transporter Periplasmic Protein; ABC-Type TUNGstate Transport System Permease Component-Like; Signal Peptide; TUNGstate Abc Transporter Permease; ABC-Type Transport Protein Permease Component; ABC Transporter; Periplasmic Protein; Basic Organic Compound ABC-Transporter; ABC Transporter Permease Protein
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MFNTKHILGAALTATLLSITPVQAEEVIKLATTTSTENSGLLKELLPTFEAQSGYKVQVIATGTGKALALGRQGDVDLVM THAPAAEAKFVEEGYGSEPRGIMENDFVVLGPKNDPAKIKGSASAEEAFGKIAAAGVPFISRGDDSGTHKKELKIWQAAN VKPEFKGYTSVGQGMGKTLLMTNELQGYTLTDRGTYIAYKGKLDLDVDFEGGATLANPYQVILINSAKYPNLNHKGAKAL SDWLISAEGQKMINDFKVQGEQLFKATYRQ
Sequences:
>Translated_270_residues MFNTKHILGAALTATLLSITPVQAEEVIKLATTTSTENSGLLKELLPTFEAQSGYKVQVIATGTGKALALGRQGDVDLVM THAPAAEAKFVEEGYGSEPRGIMENDFVVLGPKNDPAKIKGSASAEEAFGKIAAAGVPFISRGDDSGTHKKELKIWQAAN VKPEFKGYTSVGQGMGKTLLMTNELQGYTLTDRGTYIAYKGKLDLDVDFEGGATLANPYQVILINSAKYPNLNHKGAKAL SDWLISAEGQKMINDFKVQGEQLFKATYRQ >Mature_270_residues MFNTKHILGAALTATLLSITPVQAEEVIKLATTTSTENSGLLKELLPTFEAQSGYKVQVIATGTGKALALGRQGDVDLVM THAPAAEAKFVEEGYGSEPRGIMENDFVVLGPKNDPAKIKGSASAEEAFGKIAAAGVPFISRGDDSGTHKKELKIWQAAN VKPEFKGYTSVGQGMGKTLLMTNELQGYTLTDRGTYIAYKGKLDLDVDFEGGATLANPYQVILINSAKYPNLNHKGAKAL SDWLISAEGQKMINDFKVQGEQLFKATYRQ
Specific function: Unknown
COG id: COG2998
COG function: function code H; ABC-type tungstate transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28991; Mature: 28991
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNTKHILGAALTATLLSITPVQAEEVIKLATTTSTENSGLLKELLPTFEAQSGYKVQVI CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE ATGTGKALALGRQGDVDLVMTHAPAAEAKFVEEGYGSEPRGIMENDFVVLGPKNDPAKIK EECCCCEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEE GSASAEEAFGKIAAAGVPFISRGDDSGTHKKELKIWQAANVKPEFKGYTSVGQGMGKTLL CCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHEEEEEECCCCCCCCCCHHHHCCCCCEEE MTNELQGYTLTDRGTYIAYKGKLDLDVDFEGGATLANPYQVILINSAKYPNLNHKGAKAL EECCCCCEEEECCCEEEEEECEEEEEEECCCCCEECCCEEEEEECCCCCCCCCCHHHHHH SDWLISAEGQKMINDFKVQGEQLFKATYRQ HHHHHCCCCHHHHHHHHHCHHHHHHHHCCC >Mature Secondary Structure MFNTKHILGAALTATLLSITPVQAEEVIKLATTTSTENSGLLKELLPTFEAQSGYKVQVI CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE ATGTGKALALGRQGDVDLVMTHAPAAEAKFVEEGYGSEPRGIMENDFVVLGPKNDPAKIK EECCCCEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEE GSASAEEAFGKIAAAGVPFISRGDDSGTHKKELKIWQAANVKPEFKGYTSVGQGMGKTLL CCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHEEEEEECCCCCCCCCCHHHHCCCCCEEE MTNELQGYTLTDRGTYIAYKGKLDLDVDFEGGATLANPYQVILINSAKYPNLNHKGAKAL EECCCCCEEEECCCEEEEEECEEEEEEECCCCCEECCCEEEEEECCCCCCCCCCHHHHHH SDWLISAEGQKMINDFKVQGEQLFKATYRQ HHHHHCCCCHHHHHHHHHCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA