| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773260
Identifier: 119773260
GI number: 119773260
Start: 132080
End: 132517
Strand: Reverse
Name: 119773260
Synonym: Sama_0118
Alternate gene names: NA
Gene position: 132517-132080 (Counterclockwise)
Preceding gene: 119773261
Following gene: 119773259
Centisome position: 3.08
GC content: 56.39
Gene sequence:
>438_bases ATGGGACTTAAACGCCGTACCTGGAACAACATCATTATCATCGCCTGCATCCTGATGGTCTCGGTGCTGACCTTGCTCGA CCAGCGCATGAACAGCCTGCCGGAAGATGCCGCGCCACTCTTTGATGACTCAACGCCCCTGACTGGACTGCAACTGGACG GTGTCGCACTGGAACGCACCGATGGCATCTTTGCCTGCGACAGCCAGGTCAGCAACTGTGATGATTGGGGTAATGCCTGG TTGAATCTTAAGGTCTCAGCTCTGTCACAGGCCCCAGGCCAGCCCATGGGGCCGCGGGAGCTGACTATTCTCATCGGCCA TTTGCCACCACAAACCTGGTTGCTGTTTGATGACGGATTTTTGCAGTCGCCCCAGGGTCACTGGTACCTTATTCCTCCCA GCCTGCGTCAGGCACTCGAGCCCCATTTGTCAGACTAA
Upstream 100 bases:
>100_bases GTGCAAATATTGCGCTTTATGAATGCGACCGGAGGCTGAATCTTCAACCCGGGGCATCTCGTGTTACACTCAACACCAGG GTTTCGCTTGATTTTTTCCC
Downstream 100 bases:
>100_bases GCCCAATAATCCGCAGCACGAGACTAACATGCCAGAATTACCGGAAGTTGAAGTGACCCGCCAGGGCATTGCGCCCCACC TGGAAGGCAACCGCGTTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MGLKRRTWNNIIIIACILMVSVLTLLDQRMNSLPEDAAPLFDDSTPLTGLQLDGVALERTDGIFACDSQVSNCDDWGNAW LNLKVSALSQAPGQPMGPRELTILIGHLPPQTWLLFDDGFLQSPQGHWYLIPPSLRQALEPHLSD
Sequences:
>Translated_145_residues MGLKRRTWNNIIIIACILMVSVLTLLDQRMNSLPEDAAPLFDDSTPLTGLQLDGVALERTDGIFACDSQVSNCDDWGNAW LNLKVSALSQAPGQPMGPRELTILIGHLPPQTWLLFDDGFLQSPQGHWYLIPPSLRQALEPHLSD >Mature_144_residues GLKRRTWNNIIIIACILMVSVLTLLDQRMNSLPEDAAPLFDDSTPLTGLQLDGVALERTDGIFACDSQVSNCDDWGNAWL NLKVSALSQAPGQPMGPRELTILIGHLPPQTWLLFDDGFLQSPQGHWYLIPPSLRQALEPHLSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16060; Mature: 15928
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLKRRTWNNIIIIACILMVSVLTLLDQRMNSLPEDAAPLFDDSTPLTGLQLDGVALERT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCEEEECC DGIFACDSQVSNCDDWGNAWLNLKVSALSQAPGQPMGPRELTILIGHLPPQTWLLFDDGF CCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCC LQSPQGHWYLIPPSLRQALEPHLSD CCCCCCCEEECCHHHHHHHCCCCCC >Mature Secondary Structure GLKRRTWNNIIIIACILMVSVLTLLDQRMNSLPEDAAPLFDDSTPLTGLQLDGVALERT CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCEEEECC DGIFACDSQVSNCDDWGNAWLNLKVSALSQAPGQPMGPRELTILIGHLPPQTWLLFDDGF CCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEECCC LQSPQGHWYLIPPSLRQALEPHLSD CCCCCCCEEECCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA