Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773249

Identifier: 119773249

GI number: 119773249

Start: 120147

End: 121730

Strand: Reverse

Name: 119773249

Synonym: Sama_0107

Alternate gene names: NA

Gene position: 121730-120147 (Counterclockwise)

Preceding gene: 119773250

Following gene: 119773248

Centisome position: 2.83

GC content: 52.97

Gene sequence:

>1584_bases
ATGTATCTCATTACTTCTGCCGCCATGGTGGCCTCAGAGCTGCAGTCTGAATTCGGACCTCTGCCCCCCTGCTTTTTGCC
GGTGGGCAATAAACGCCTGTTCCATCATCAGCTGGCTTTAATTCCCGCCGGCGAACGCACCATCATTACCCTGCCGGAGG
GCTTTACCCCCGGTCCTTATGACAGCCAAAGCCTCAAAGACTATGGTGTTGAGCTATTGTACCTGCCGCCAACCCTGAGT
TTGGGTGAATCCATCGTCTATGCCCTTATCCAGCTGGAGTTTGCCGACGATGAACCCTTGTATATTCTCCACGGCGATAC
CCTGTTCGATAGCCTGCCACGTCAAACCGATTGTCTGGGCCTGAGTCAGGTTGAAGACAACTACAACTGGGCAGAGTTTG
ATGCCCAAAGCGGCACTCTGCGTCCTTACCATGCAGAGCTGAGACCTTCCAGCGAATTGATTTCAAATGGCTTTTTTAGT
TTCTCCGCACCAAGAACCTTAATAAGGTACATCACTCAGGCCAAGGGCGACTTTATTGCTGGCCTGAATGGCTACATTGA
TGACAAGGGCCTGACCCCGATAACCTTGCCCCATTGGTACGACTTTGGACACAGCCATACCTATTACCAATCCAAGAGCC
GGATGACGACTCAGCGGGCCTTCAACGGGATGGCAATTCAGGGGCAGGTGGTCAAGAAATTCAGCCGCAATAAACATAAG
CTCGCTGCCGAGGCCAACTGGTATCAAAGTTTGCCAGGGCCAATGCGGGGCTACATTCCACAGCTGCTGGGCTGTGATGA
AAGCCCCGAGCTATTTGGCTACAGCATAGAGTATCTGCACCTGACAGCCTTGAATGAGCTCTACGTCTTCAGCCAGTTGC
CGGCCTTTGCCTGGCGTAAGGTACTCAAAGCATGCTGCCAGTTCCTCAAGGACGCCAGCAGCTATTCAGTGGCCGATGCC
CAAACCCTCAGTGGGCTTTTTATGGATAAGACCCTGAGCCGGCTTGAGGATTTCGCCAGTCAAAGCGGCATATCTGTGGC
CCAGGAAAACCGTATCAATGGCGCCCTGCGGCCGTCTTTGCTGGAGCTGGCCCGGATAAGTCGCGAGTATTTGCCCAAAG
ATAATGGCAGGCAACACCTGCTGCACGGTGACTTTTGTTTCAGCAATATTCTGTATGACTTTCGAACCTGTAATATCAAG
GTCATAGACCCGCGAGGACTGGACGGTAACGACAAGCAAACCATCCACGGCAATGGCTTATACGACATTGCCAAGTTGGC
ACACTCGGTATTGGGGCTCTATGACGCCATTATTGCCGGTTATTTTAAAGCCGAGCGGCTGGGGCAGAACCTCGACTTCA
GTATTGCCATTACGCCCAGACGCGAGCAAATCATGGCCGACTTCGTCCGGCTGATGGCCAGCGAGTTCGCCGTCAGCGAA
GCCGAGCTTTACGCCATGCAAATTCAGTTGTTCCTCTCCATGCTGCCACTCCACAGTGACAGACCAGACCGGCAGCTTGG
ATTCATAGGTAACGCCTATCGACTCTATGACAGGCTGCTTGCCTGCACAGGAAATCCATCATGA

Upstream 100 bases:

>100_bases
TTTTATATCGATGACAGGGCCATCAGACCGTCTGAATTCGCCCGCATGAGCCGGGCCGAAATTGAGCAACTTATCGAAGA
CGACAAAGCATAGGACGTGC

Downstream 100 bases:

>100_bases
TAGTGATCCCCATGGCGGGGCTAAGCTCCCGCTTTTTCAACGCTGGCTACACCCAGCCCAAATACATGCTCGACGCTGGC
GGCATGCCACTGTTTGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS
LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS
FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA
QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK
VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS

Sequences:

>Translated_527_residues
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS
LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS
FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA
QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK
VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS
>Mature_527_residues
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS
LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS
FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA
QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK
VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59222; Mature: 59222

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00109 PROTEIN_KINASE_TYR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY
CEEEHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCC
DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG
CCCCHHHHCEEEEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHHCCCCCCCCC
LSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFIA
HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
GLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
CCCCEECCCCCCCEECCCHHCCCCCCCEEHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHH
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRK
EECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCHHHHHHH
VLKACCQFLKDASSYSVADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHH
LELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIHGNGL
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHEECEEEEECCCCCCCCCCCEEECCCH
YDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY
CEEEHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCC
DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG
CCCCHHHHCEEEEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHHCCCCCCCCC
LSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFIA
HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
GLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK
CCCCEECCCCCCCEECCCHHCCCCCCCEEHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHH
LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRK
EECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCHHHHHHH
VLKACCQFLKDASSYSVADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHH
LELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIHGNGL
HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHEECEEEEECCCCCCCCCCCEEECCCH
YDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA