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The map label for this gene is kdkA [H]

Identifier: 119773243

GI number: 119773243

Start: 114298

End: 115050

Strand: Reverse

Name: kdkA [H]

Synonym: Sama_0101

Alternate gene names: 119773243

Gene position: 115050-114298 (Counterclockwise)

Preceding gene: 119773247

Following gene: 119773241

Centisome position: 2.67

GC content: 57.24

Gene sequence:

>753_bases
ATGGCCGCAGGTTCCACGCTTTGGACAAGAATTCCCGCGATGCAGCAACAAAACCATCCGCCCTACACCCTGGCCATTGC
CCAGGGCGAGTCCATCTCACTGGACCCGTCCCATTTCACCCCTGAACATTGGCAGGCTCTCGCCGCCGTGACTGGCACCT
CGAAAGGGCGTTATACCACCTGGTTTGTGCGCCACCCCGAGGCTAATCAAGACTGGGTGCTGCGCCACTACTGGCGCGGA
GGGTTGATGGAAAAGTTCAGTAAAGATAGATATCTGTATACAGGTATGGCGAATACCCGCGCCATCGCAGAGCTGGCTTT
GCTTGAAAAGCTCCATGCAGAGGGCTTTCCCGTGCCCCGCCCCGTGGGTGCCAGGGTACGTCGATATGCACTCTGGTACA
GCGCCGATATTCTGATTGAGCGGATGCCCGGATGTCGCGACCTGCTGGCCTGGCTGGAACAAGGTCCATTGGATGAGGCA
GAGTGGAAAGCCCTAGGCGTTTGCATCGCCCGCTTCCATCACCGCGGCGTCTACCACGCCGATCTTAACGCCAAGAACAT
CCTCAAGGGGCCACAGGGTTTTGCGCTGATTGACTTTGACCGGGGTGAAATCCGCAATCCCGCGAATAGCTGGCAGCAAG
CCAACCTGTCCAGACTGAGACGCTCTTTTGATAAAGAAAAAGGCAAGCTTCCTTCGCTTGCCTTCGATGAGTCCTGCTGG
CAATGGCTACTGGAGGGTTACGCTGCTGCGTAA

Upstream 100 bases:

>100_bases
CGATGGCAGAGAGGCGGAGCAAACACAGGGATTTCATCAGGCTGGGATCAAATGTCATGGTTGGGCTGGCCTTGGTGCAA
AGCCCGGATCTTAATGTAGA

Downstream 100 bases:

>100_bases
CCCAATACCGCCAGTTGACGACTCAGCGCCCCACGATTGCTCTCCACGACTCTTAACCCAGCCTCACCGGCGGTCAGGCG
GCCAACCGAATCCTGTGCAG

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAAGSTLWTRIPAMQQQNHPPYTLAIAQGESISLDPSHFTPEHWQALAAVTGTSKGRYTTWFVRHPEANQDWVLRHYWRG
GLMEKFSKDRYLYTGMANTRAIAELALLEKLHAEGFPVPRPVGARVRRYALWYSADILIERMPGCRDLLAWLEQGPLDEA
EWKALGVCIARFHHRGVYHADLNAKNILKGPQGFALIDFDRGEIRNPANSWQQANLSRLRRSFDKEKGKLPSLAFDESCW
QWLLEGYAAA

Sequences:

>Translated_250_residues
MAAGSTLWTRIPAMQQQNHPPYTLAIAQGESISLDPSHFTPEHWQALAAVTGTSKGRYTTWFVRHPEANQDWVLRHYWRG
GLMEKFSKDRYLYTGMANTRAIAELALLEKLHAEGFPVPRPVGARVRRYALWYSADILIERMPGCRDLLAWLEQGPLDEA
EWKALGVCIARFHHRGVYHADLNAKNILKGPQGFALIDFDRGEIRNPANSWQQANLSRLRRSFDKEKGKLPSLAFDESCW
QWLLEGYAAA
>Mature_249_residues
AAGSTLWTRIPAMQQQNHPPYTLAIAQGESISLDPSHFTPEHWQALAAVTGTSKGRYTTWFVRHPEANQDWVLRHYWRGG
LMEKFSKDRYLYTGMANTRAIAELALLEKLHAEGFPVPRPVGARVRRYALWYSADILIERMPGCRDLLAWLEQGPLDEAE
WKALGVCIARFHHRGVYHADLNAKNILKGPQGFALIDFDRGEIRNPANSWQQANLSRLRRSFDKEKGKLPSLAFDESCWQ
WLLEGYAAA

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28545; Mature: 28414

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGSTLWTRIPAMQQQNHPPYTLAIAQGESISLDPSHFTPEHWQALAAVTGTSKGRYTT
CCCCCHHHHHCCHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEE
WFVRHPEANQDWVLRHYWRGGLMEKFSKDRYLYTGMANTRAIAELALLEKLHAEGFPVPR
EEEECCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
PVGARVRRYALWYSADILIERMPGCRDLLAWLEQGPLDEAEWKALGVCIARFHHRGVYHA
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE
DLNAKNILKGPQGFALIDFDRGEIRNPANSWQQANLSRLRRSFDKEKGKLPSLAFDESCW
CCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
QWLLEGYAAA
HHHHHHHCCC
>Mature Secondary Structure 
AAGSTLWTRIPAMQQQNHPPYTLAIAQGESISLDPSHFTPEHWQALAAVTGTSKGRYTT
CCCCHHHHHCCHHHHCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEE
WFVRHPEANQDWVLRHYWRGGLMEKFSKDRYLYTGMANTRAIAELALLEKLHAEGFPVPR
EEEECCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
PVGARVRRYALWYSADILIERMPGCRDLLAWLEQGPLDEAEWKALGVCIARFHHRGVYHA
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE
DLNAKNILKGPQGFALIDFDRGEIRNPANSWQQANLSRLRRSFDKEKGKLPSLAFDESCW
CCCHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
QWLLEGYAAA
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA