| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773232
Identifier: 119773232
GI number: 119773232
Start: 100859
End: 101539
Strand: Reverse
Name: 119773232
Synonym: Sama_0090
Alternate gene names: NA
Gene position: 101539-100859 (Counterclockwise)
Preceding gene: 119773233
Following gene: 119773231
Centisome position: 2.36
GC content: 50.81
Gene sequence:
>681_bases ATGCGACGTTGCCCCCTGTGCCTCAAGCTGGACACCCAGTTATTTCATCAGGACAAAAAACGCAGTTTCCATCACTGTGC CACATGTGGAATGGTGTTTGCCGACGGTGCAACACATTTGCCGCCTCAAGCGATTCGTCAGCGTTACGGGCGCGGTGGCA CCCAGGATAATCAGCGCCAGCTATCGCCGTTTTTATTGTCATTGCTTGAACAAATCACCAGCCTGCATGGTACAGAGGTG CGGGGATTAAACTACGGTCGGGTATTGGATACAGAGAGTCACTGGCAACTTAATTCCGCTGGCCATGAGCTCAGCCAGTA CGACCCTTTTACCGCGCCTGATCCCGAAGCCCTGCAAAGCCAATACGACTTTATATGCTGTTTCAGGGTGTTCGAACATT TTGCTGCCCCCCACCGGGAATGGCAGCTCTTTAACCGCTTACTCAAAGCCGGTGGTTTTTTGGCCATCAGCACCAGGATG CTGACCAACCCATCACGCTTTGATAAATGGCACCATAAAAATAACCCTGCCCATGTCAGCTTTCCCTGTCGGGAAACCTT CGAATATTTGGCTGCTGACAGTGGCTTTCGGCTAATATTTGCCGAAAATGACTTCATCCTGATGCAAAAACCATCGGGAT CTGATATAAAACGCGACCCAAATTCATGCCCTGCCCTGTGA
Upstream 100 bases:
>100_bases GCCAAGGCACCGTGTTGAGGCGGCAGTCTAACTGCCGCCTTTTTTCTTTGGTGCATGTTATACTGCCACTGCCTTGGTAA ACCTCAAGCGAACCCTTTCA
Downstream 100 bases:
>100_bases GCCGGGCTGTTCAAGGCACTTCGGAGTTAGAGACCCATGACCCGTATCAAGAAGACACGTAAAGCTGGCGGAACAGCCCC CAAGCAGGCACCTCGCACCC
Product: hypothetical protein
Products: NA
Alternate protein names: Methyltransferase-Related Protein; Methyltransferase Domain-Containing Protein; Methyltransferase; Methyltransferase-Like Protein; Methyltransferase/Methylase; Thymidylate Kinase
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MRRCPLCLKLDTQLFHQDKKRSFHHCATCGMVFADGATHLPPQAIRQRYGRGGTQDNQRQLSPFLLSLLEQITSLHGTEV RGLNYGRVLDTESHWQLNSAGHELSQYDPFTAPDPEALQSQYDFICCFRVFEHFAAPHREWQLFNRLLKAGGFLAISTRM LTNPSRFDKWHHKNNPAHVSFPCRETFEYLAADSGFRLIFAENDFILMQKPSGSDIKRDPNSCPAL
Sequences:
>Translated_226_residues MRRCPLCLKLDTQLFHQDKKRSFHHCATCGMVFADGATHLPPQAIRQRYGRGGTQDNQRQLSPFLLSLLEQITSLHGTEV RGLNYGRVLDTESHWQLNSAGHELSQYDPFTAPDPEALQSQYDFICCFRVFEHFAAPHREWQLFNRLLKAGGFLAISTRM LTNPSRFDKWHHKNNPAHVSFPCRETFEYLAADSGFRLIFAENDFILMQKPSGSDIKRDPNSCPAL >Mature_226_residues MRRCPLCLKLDTQLFHQDKKRSFHHCATCGMVFADGATHLPPQAIRQRYGRGGTQDNQRQLSPFLLSLLEQITSLHGTEV RGLNYGRVLDTESHWQLNSAGHELSQYDPFTAPDPEALQSQYDFICCFRVFEHFAAPHREWQLFNRLLKAGGFLAISTRM LTNPSRFDKWHHKNNPAHVSFPCRETFEYLAADSGFRLIFAENDFILMQKPSGSDIKRDPNSCPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25953; Mature: 25953
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRCPLCLKLDTQLFHQDKKRSFHHCATCGMVFADGATHLPPQAIRQRYGRGGTQDNQRQ CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCHHHH LSPFLLSLLEQITSLHGTEVRGLNYGRVLDTESHWQLNSAGHELSQYDPFTAPDPEALQS HHHHHHHHHHHHHHHCCCEECCCCCCCEECCCCCEEECCCCCHHHHCCCCCCCCHHHHHH QYDFICCFRVFEHFAAPHREWQLFNRLLKAGGFLAISTRMLTNPSRFDKWHHKNNPAHVS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEHHHHCCCHHHHHHHCCCCCCEEE FPCRETFEYLAADSGFRLIFAENDFILMQKPSGSDIKRDPNSCPAL CCHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MRRCPLCLKLDTQLFHQDKKRSFHHCATCGMVFADGATHLPPQAIRQRYGRGGTQDNQRQ CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCHHHH LSPFLLSLLEQITSLHGTEVRGLNYGRVLDTESHWQLNSAGHELSQYDPFTAPDPEALQS HHHHHHHHHHHHHHHCCCEECCCCCCCEECCCCCEEECCCCCHHHHCCCCCCCCHHHHHH QYDFICCFRVFEHFAAPHREWQLFNRLLKAGGFLAISTRMLTNPSRFDKWHHKNNPAHVS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEHHHHCCCHHHHHHHCCCCCCEEE FPCRETFEYLAADSGFRLIFAENDFILMQKPSGSDIKRDPNSCPAL CCHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA