| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is tag [H]
Identifier: 119773169
GI number: 119773169
Start: 26565
End: 27134
Strand: Direct
Name: tag [H]
Synonym: Sama_0027
Alternate gene names: 119773169
Gene position: 26565-27134 (Clockwise)
Preceding gene: 119773166
Following gene: 119773172
Centisome position: 0.62
GC content: 50.18
Gene sequence:
>570_bases ATGGCAGATAACAAAGTGAGATGCGCTTGGGTCAGTGATGATAAGCTGTACCAGCAGTATCACGATGAGGTATGGGGCAT GCCGGTTTACGATGCCAAAGAGCTGTTTGCCAAGCTTTGTCTCGATGGTCAGCAGGCCGGCTTATCCTGGATTACCATCC TCAGAAAGCAGGCAAGTTACGAGGCCGCCTTCGCCGATTTTGAACCTGCTATCATAGCCACTTATGACGAGGCTAAGGTT GAAGAGCTGCTGCAAAATCCGGGCATAGTCCGTAACCGGGCCAAGGTGAATTCCATCATTCGCAATGCCCGCGCATATCT GAATTACGTTGATGCCGGCAACGACTTCTCGATGTTCTTGTGGAGCTTTGTCGGTGGTGAACCCAAGGTCAATCGATTTT CGTCCATTTCAGAGGTGCCTGCCCAGACTGCTGAATCCGAAGCCATGTCCAAGGCGCTTAAGAAACTGGGCTTCAATTTC GTTGGTCCCACTATTTGCTATGCCTTTATGCAGGCGGTGGGCATGGTTAACGATCACACCACAGACTGCCATTGCTACCA AAAATATTGA
Upstream 100 bases:
>100_bases GCTGTCAGCTGAAAATAGAAAATGGGTTCGATTATACCTTGTAGATCTGTGGTTATGTAGGCTATTTTTGAGCGAATTTA CGGCTAAATAGGGACTTTGA
Downstream 100 bases:
>100_bases TGCAGTGAAATAATTGCCGGCCAATAAAAAAGGTGTTCCACGTGGAACACCTTTTATTTTTCAAAAATCCTCTCCTAAGA GGAAAGGAAGTGCTGGCGCC
Product: DNA-3-methyladenine glycosylase I
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MADNKVRCAWVSDDKLYQQYHDEVWGMPVYDAKELFAKLCLDGQQAGLSWITILRKQASYEAAFADFEPAIIATYDEAKV EELLQNPGIVRNRAKVNSIIRNARAYLNYVDAGNDFSMFLWSFVGGEPKVNRFSSISEVPAQTAESEAMSKALKKLGFNF VGPTICYAFMQAVGMVNDHTTDCHCYQKY
Sequences:
>Translated_189_residues MADNKVRCAWVSDDKLYQQYHDEVWGMPVYDAKELFAKLCLDGQQAGLSWITILRKQASYEAAFADFEPAIIATYDEAKV EELLQNPGIVRNRAKVNSIIRNARAYLNYVDAGNDFSMFLWSFVGGEPKVNRFSSISEVPAQTAESEAMSKALKKLGFNF VGPTICYAFMQAVGMVNDHTTDCHCYQKY >Mature_188_residues ADNKVRCAWVSDDKLYQQYHDEVWGMPVYDAKELFAKLCLDGQQAGLSWITILRKQASYEAAFADFEPAIIATYDEAKVE ELLQNPGIVRNRAKVNSIIRNARAYLNYVDAGNDFSMFLWSFVGGEPKVNRFSSISEVPAQTAESEAMSKALKKLGFNFV GPTICYAFMQAVGMVNDHTTDCHCYQKY
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=180, Percent_Identity=54.4444444444444, Blast_Score=219, Evalue=8e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 21353; Mature: 21222
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADNKVRCAWVSDDKLYQQYHDEVWGMPVYDAKELFAKLCLDGQQAGLSWITILRKQASY CCCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH EAAFADFEPAIIATYDEAKVEELLQNPGIVRNRAKVNSIIRNARAYLNYVDAGNDFSMFL HHHHCCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WSFVGGEPKVNRFSSISEVPAQTAESEAMSKALKKLGFNFVGPTICYAFMQAVGMVNDHT HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC TDCHCYQKY CCCEEECCC >Mature Secondary Structure ADNKVRCAWVSDDKLYQQYHDEVWGMPVYDAKELFAKLCLDGQQAGLSWITILRKQASY CCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH EAAFADFEPAIIATYDEAKVEELLQNPGIVRNRAKVNSIIRNARAYLNYVDAGNDFSMFL HHHHCCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WSFVGGEPKVNRFSSISEVPAQTAESEAMSKALKKLGFNFVGPTICYAFMQAVGMVNDHT HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC TDCHCYQKY CCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]