| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is nudH [C]
Identifier: 119773159
GI number: 119773159
Start: 16992
End: 17393
Strand: Reverse
Name: nudH [C]
Synonym: Sama_0017
Alternate gene names: 119773159
Gene position: 17393-16992 (Counterclockwise)
Preceding gene: 119773160
Following gene: 119773154
Centisome position: 0.4
GC content: 52.99
Gene sequence:
>402_bases ATGGCTTTCGACGATACCTTCCGCTTGAGCAGCCACGCGGTGATCACCAACGACAAAAATAACGTGCTGCTACTTAAAGC TGACTATGGCAATAAGCATTGGGGCCTACCCGGCGGAGCCTTGGAACCGGGCGAAACCATACATCAGGCGCTGATACGTG AATGTTTGGAGGAGCTCGGCCAGCTGGTCGCAATCGACTACCTGAGCGGTGTGTATTTTCACTCGGCTTACAATTCACAG GCCTTTATCTTTCGCGCCCGCCTGACAAGCCCGAATATCATCCTGAGCCCAGAGCACAGTGAATATGGTTTCTTCGTCCC AGACAGCCTACATGCAGTGCAGCAACGCAGGATTAGCGAGTGCCTCGACTTTAACGGCAAGGTAGTCAGTGCCGCTTTTT GA
Upstream 100 bases:
>100_bases CTATGGCGTTGGAAACCGTTATCCACGGTCTGCGACTGATGCTGGCCACCGCTGTCACCACAGCCACCGATATCCACGAG AGCGCCGGAGTCACCCACTG
Downstream 100 bases:
>100_bases TCGCTATGGCTGACAATCCTCTCTTGCACTGTGATAAAAACACCAATGCAAGGAACAAAAAAGGAAAGCCGCAGCTTTCC TTTTTTTCTTCCGAACCGGA
Product: MutT/nudix family protein
Products: NA
Alternate protein names: MutT/Nudix Family Protein; MutT-Like Protein
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MAFDDTFRLSSHAVITNDKNNVLLLKADYGNKHWGLPGGALEPGETIHQALIRECLEELGQLVAIDYLSGVYFHSAYNSQ AFIFRARLTSPNIILSPEHSEYGFFVPDSLHAVQQRRISECLDFNGKVVSAAF
Sequences:
>Translated_133_residues MAFDDTFRLSSHAVITNDKNNVLLLKADYGNKHWGLPGGALEPGETIHQALIRECLEELGQLVAIDYLSGVYFHSAYNSQ AFIFRARLTSPNIILSPEHSEYGFFVPDSLHAVQQRRISECLDFNGKVVSAAF >Mature_132_residues AFDDTFRLSSHAVITNDKNNVLLLKADYGNKHWGLPGGALEPGETIHQALIRECLEELGQLVAIDYLSGVYFHSAYNSQA FIFRARLTSPNIILSPEHSEYGFFVPDSLHAVQQRRISECLDFNGKVVSAAF
Specific function: Preferentially Hydrolyzes Diadenosine Penta-Phosphate With ATP As One Of The Reaction Products. Also Able To Hydrolyze Diadenosine Hexa- And Tetra-Phosphate. Has No Activity On Diadenosine Tri-Phosphate, Adp-Ribose, NADH And Udp-Glucose. In The Meningitis
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.6.1.- [C]
Molecular weight: Translated: 14843; Mature: 14712
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFDDTFRLSSHAVITNDKNNVLLLKADYGNKHWGLPGGALEPGETIHQALIRECLEELG CCCCCCEECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH QLVAIDYLSGVYFHSAYNSQAFIFRARLTSPNIILSPEHSEYGFFVPDSLHAVQQRRISE HHHHHHHHHCEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCEECCCHHHHHHHHHHHH CLDFNGKVVSAAF HHCCCCEEEEEEC >Mature Secondary Structure AFDDTFRLSSHAVITNDKNNVLLLKADYGNKHWGLPGGALEPGETIHQALIRECLEELG CCCCCEECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH QLVAIDYLSGVYFHSAYNSQAFIFRARLTSPNIILSPEHSEYGFFVPDSLHAVQQRRISE HHHHHHHHHCEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCEECCCHHHHHHHHHHHH CLDFNGKVVSAAF HHCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA