Click here to switch to the map view.

The map label for this gene is ygcU [H]

Identifier: 119718807

GI number: 119718807

Start: 4860097

End: 4861653

Strand: Reverse

Name: ygcU [H]

Synonym: Noca_4590

Alternate gene names: 119718807

Gene position: 4861653-4860097 (Counterclockwise)

Preceding gene: 119718813

Following gene: 119718806

Centisome position: 97.51

GC content: 74.69

Gene sequence:

>1557_bases
ATGCATCCGTCCCGCTGGGGCGATCCGACCCGCGCCCGCGCGCTCCCCGACGAGGCGCGCGGCCTGGTCGAGATGGTGTT
CGGTGTCGACGACCGCCCCACCGTCGCGCACCCGGCCCTCGCGCCGTCCGCGCTCGCGCCCGACCTGGTCGCTGGGCTCG
AAGAGGTCGTCGGCGTGGGCCACGTGCTGATCGACGACGCGACCCGGCGGCTGCGCACCCGCGGCAAGTCCACCCCGGAC
CTGCTCCGCGCCCGCGCCGGCGACCTCGCCGACGCCCCGGACGCCGTGGTCCGCCCCGGCAGCCACGACGAGGTCGCCGC
AGTGCTCGCCTTCGCGGTCGAGCACCACCTGGCGGTGGTGCCGTTCGGCGGCGGTACGTCGGTCACCGGGGGGCTGGTCG
CCCGCCGCGAGGGCTTCGCGGCCGTGCTCAGCCTGGACCTGGTGCGGATGAAGCGGCTGCTCGCGGTCGACCACGTCTCG
ATGACGGCGACCCTCGAGCCCGGCCTGCGCGGCCCGGAGGCCGAGGCGCTGCTGGCCGCCGAGGGGATGACGATCGGGCA
CTTCCCGCAGTCCTTCGAGTACGCCAGCCTCGGTGGCTTCGCCGCCACCCGCTCCAGCGGCCAGTCCAGCGCCGGGTTCG
GCCGCTTCGACGCGCTGGTCGTCGGGCTGACCGTGGCCACCCCCCAGGGCCGGATCGTCCTCGGCACGGCACCGGCCAAC
GCCGCGGGCCCGGACCTGCGCCAGCTCTTCCTCGGCTCGGAGGGCACCCTCGGGGTGATCACCTCCCTGACCCTGCGGGT
CCGGCCCGTGCCGGCGGTGCAGGTGTACGAGGCCTGGCGCTGGCCGTCGTTCGCCGACGGTGCCACCGCCATGCGGACCC
TGGCCCAGGCCGGGCTGCTGCCCACGGTGCTGCGGCTCTCCGACGAGTCGGAGTCGGCGATCAACCTCGCCGACCCGGCC
GCGATCGGCGGGGAGTCTGCGGGAGGCTGCCTGATGGTCGTCGGTTTCGAGGGCGAGCCGGCCGCGGTCGAGGCGAAGCG
GTCCGCCGTCACGGCGGTCTTCGAGGGCCTCGGCGGCACCGGCGTCGGCACCGGCCCGGGGGAGAAGTGGGCACACGGGC
GCTACGACGCGCCGTACCTGCGTGACTCGCTGCTCGACGCCGGGGTGCTCGTGGAGACGTTGGAGACCGCGACGTTCTGG
TCGAACCTCGACCGCCTCTACACCGGCGTGAAGACCGCGCTCGAGACCTCCCTCGGCCAGCCGTCGCTGGTGCTCTGCCA
CATCTCGCACGTCTACGAGACCGGCGCCTCGCTCTACTTCACCGTGGCCGCGAAGGAGACCGACGACCCGCTGGGCCAGT
GGCGGGTGGCCAAGGCGGCCGCCAGCGACGCGATGCTCGCGGCCGGTGCGACGATCACCCACCACCACGCGGTCGGCACC
GACCACTTGCCGTGGTTCGAGCGCGAGATCGGCCCCGTCGGCGTCTCGATCCTGCGGGCGGTCAAGGCCGACCTGGACCC
GACCGGGGTGCTCAACCCGGGGGTGCTGATCCCGTGA

Upstream 100 bases:

>100_bases
GCGTCGAGATAGCCGTCCCGGGGCTCTGCTCGATCGGGAGCGTTGTGACGGAGTGACGTCATGTGTCACACTGTAACACG
TGACCGTGAACCAGACCGAG

Downstream 100 bases:

>100_bases
GCGCGCCGGAGAGCCGCAGGGCGTTCACGTTCCTGGTCAACCCGTCCTCGGGCGGCGGCGCCGCGCCGGAGGCCGTGGTG
CCGGTGGCCCGGCTGCTGCG

Product: FAD linked oxidase domain-containing protein

Products: alkyl-glycerone 3-phosphate; long-chain acid anion

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MHPSRWGDPTRARALPDEARGLVEMVFGVDDRPTVAHPALAPSALAPDLVAGLEEVVGVGHVLIDDATRRLRTRGKSTPD
LLRARAGDLADAPDAVVRPGSHDEVAAVLAFAVEHHLAVVPFGGGTSVTGGLVARREGFAAVLSLDLVRMKRLLAVDHVS
MTATLEPGLRGPEAEALLAAEGMTIGHFPQSFEYASLGGFAATRSSGQSSAGFGRFDALVVGLTVATPQGRIVLGTAPAN
AAGPDLRQLFLGSEGTLGVITSLTLRVRPVPAVQVYEAWRWPSFADGATAMRTLAQAGLLPTVLRLSDESESAINLADPA
AIGGESAGGCLMVVGFEGEPAAVEAKRSAVTAVFEGLGGTGVGTGPGEKWAHGRYDAPYLRDSLLDAGVLVETLETATFW
SNLDRLYTGVKTALETSLGQPSLVLCHISHVYETGASLYFTVAAKETDDPLGQWRVAKAAASDAMLAAGATITHHHAVGT
DHLPWFEREIGPVGVSILRAVKADLDPTGVLNPGVLIP

Sequences:

>Translated_518_residues
MHPSRWGDPTRARALPDEARGLVEMVFGVDDRPTVAHPALAPSALAPDLVAGLEEVVGVGHVLIDDATRRLRTRGKSTPD
LLRARAGDLADAPDAVVRPGSHDEVAAVLAFAVEHHLAVVPFGGGTSVTGGLVARREGFAAVLSLDLVRMKRLLAVDHVS
MTATLEPGLRGPEAEALLAAEGMTIGHFPQSFEYASLGGFAATRSSGQSSAGFGRFDALVVGLTVATPQGRIVLGTAPAN
AAGPDLRQLFLGSEGTLGVITSLTLRVRPVPAVQVYEAWRWPSFADGATAMRTLAQAGLLPTVLRLSDESESAINLADPA
AIGGESAGGCLMVVGFEGEPAAVEAKRSAVTAVFEGLGGTGVGTGPGEKWAHGRYDAPYLRDSLLDAGVLVETLETATFW
SNLDRLYTGVKTALETSLGQPSLVLCHISHVYETGASLYFTVAAKETDDPLGQWRVAKAAASDAMLAAGATITHHHAVGT
DHLPWFEREIGPVGVSILRAVKADLDPTGVLNPGVLIP
>Mature_518_residues
MHPSRWGDPTRARALPDEARGLVEMVFGVDDRPTVAHPALAPSALAPDLVAGLEEVVGVGHVLIDDATRRLRTRGKSTPD
LLRARAGDLADAPDAVVRPGSHDEVAAVLAFAVEHHLAVVPFGGGTSVTGGLVARREGFAAVLSLDLVRMKRLLAVDHVS
MTATLEPGLRGPEAEALLAAEGMTIGHFPQSFEYASLGGFAATRSSGQSSAGFGRFDALVVGLTVATPQGRIVLGTAPAN
AAGPDLRQLFLGSEGTLGVITSLTLRVRPVPAVQVYEAWRWPSFADGATAMRTLAQAGLLPTVLRLSDESESAINLADPA
AIGGESAGGCLMVVGFEGEPAAVEAKRSAVTAVFEGLGGTGVGTGPGEKWAHGRYDAPYLRDSLLDAGVLVETLETATFW
SNLDRLYTGVKTALETSLGQPSLVLCHISHVYETGASLYFTVAAKETDDPLGQWRVAKAAASDAMLAAGATITHHHAVGT
DHLPWFEREIGPVGVSILRAVKADLDPTGVLNPGVLIP

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=523, Percent_Identity=29.8279158699809, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI37595756, Length=496, Percent_Identity=27.2177419354839, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI37595754, Length=518, Percent_Identity=25.8687258687259, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI119964728, Length=450, Percent_Identity=24.4444444444444, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI48994907, Length=487, Percent_Identity=26.2833675564682, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789351, Length=440, Percent_Identity=24.3181818181818, Blast_Score=90, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17556096, Length=477, Percent_Identity=30.398322851153, Blast_Score=246, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI71992381, Length=489, Percent_Identity=23.5173824130879, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71992373, Length=485, Percent_Identity=23.9175257731959, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17534361, Length=279, Percent_Identity=27.2401433691756, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320027, Length=442, Percent_Identity=24.2081447963801, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320023, Length=196, Percent_Identity=30.1020408163265, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320764, Length=174, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24653753, Length=525, Percent_Identity=30.0952380952381, Blast_Score=258, Evalue=5e-69,
Organism=Drosophila melanogaster, GI18921117, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639277, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639275, Length=218, Percent_Identity=29.8165137614679, Blast_Score=85, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: 2.5.1.26

Molecular weight: Translated: 53878; Mature: 53878

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPSRWGDPTRARALPDEARGLVEMVFGVDDRPTVAHPALAPSALAPDLVAGLEEVVGVG
CCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCC
HVLIDDATRRLRTRGKSTPDLLRARAGDLADAPDAVVRPGSHDEVAAVLAFAVEHHLAVV
HHEEHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCEEEE
PFGGGTSVTGGLVARREGFAAVLSLDLVRMKRLLAVDHVSMTATLEPGLRGPEAEALLAA
ECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEE
EGMTIGHFPQSFEYASLGGFAATRSSGQSSAGFGRFDALVVGLTVATPQGRIVLGTAPAN
CCCEECCCCCCCCCHHCCCCHHHCCCCCCCCCCCHHEEEEEEEEEECCCCCEEEEECCCC
AAGPDLRQLFLGSEGTLGVITSLTLRVRPVPAVQVYEAWRWPSFADGATAMRTLAQAGLL
CCCHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHH
PTVLRLSDESESAINLADPAAIGGESAGGCLMVVGFEGEPAAVEAKRSAVTAVFEGLGGT
HHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
GVGTGPGEKWAHGRYDAPYLRDSLLDAGVLVETLETATFWSNLDRLYTGVKTALETSLGQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSLVLCHISHVYETGASLYFTVAAKETDDPLGQWRVAKAAASDAMLAAGATITHHHAVGT
CCEEEEEHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEEEECCCCCC
DHLPWFEREIGPVGVSILRAVKADLDPTGVLNPGVLIP
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHPSRWGDPTRARALPDEARGLVEMVFGVDDRPTVAHPALAPSALAPDLVAGLEEVVGVG
CCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCC
HVLIDDATRRLRTRGKSTPDLLRARAGDLADAPDAVVRPGSHDEVAAVLAFAVEHHLAVV
HHEEHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCEEEE
PFGGGTSVTGGLVARREGFAAVLSLDLVRMKRLLAVDHVSMTATLEPGLRGPEAEALLAA
ECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEE
EGMTIGHFPQSFEYASLGGFAATRSSGQSSAGFGRFDALVVGLTVATPQGRIVLGTAPAN
CCCEECCCCCCCCCHHCCCCHHHCCCCCCCCCCCHHEEEEEEEEEECCCCCEEEEECCCC
AAGPDLRQLFLGSEGTLGVITSLTLRVRPVPAVQVYEAWRWPSFADGATAMRTLAQAGLL
CCCHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCHH
PTVLRLSDESESAINLADPAAIGGESAGGCLMVVGFEGEPAAVEAKRSAVTAVFEGLGGT
HHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
GVGTGPGEKWAHGRYDAPYLRDSLLDAGVLVETLETATFWSNLDRLYTGVKTALETSLGQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSLVLCHISHVYETGASLYFTVAAKETDDPLGQWRVAKAAASDAMLAAGATITHHHAVGT
CCEEEEEHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEEEECCCCCC
DHLPWFEREIGPVGVSILRAVKADLDPTGVLNPGVLIP
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 1-acyl-glycerone 3-phosphate; long-chain alcohol

Specific reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = an alkyl-glycerone 3-phosphate + a long-chain acid anion

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]