Click here to switch to the map view.

The map label for this gene is hyfE [C]

Identifier: 119718686

GI number: 119718686

Start: 4721605

End: 4722267

Strand: Reverse

Name: hyfE [C]

Synonym: Noca_4467

Alternate gene names: 119718686

Gene position: 4722267-4721605 (Counterclockwise)

Preceding gene: 119718687

Following gene: 119718685

Centisome position: 94.71

GC content: 70.44

Gene sequence:

>663_bases
ATGGCCGCGGAGACGTTCGCGCAGCTGGTCGGTCTCAGCACCGGGGTCCTGCTGCTGTCCGCCGTCCTCCTGGTGTGGAG
GCGCTCCCTGCACGCCCAGGTCGCGCTGCTGGCCACGCAGGGGGTGGCGCTGGCAGTCCTGGTCCTGGTGCTCGGCCTCC
ACGAGGACGACGCCGAGCTGCTGGCGGTCGCCGCACTGGTGCTCGTCCTCAAGGCCGTCGTGCTCCCACGGATCCTGATC
CGTACCGTCGCCCGGCTCGGCGTCGGCGTCCGCGAGGAGACGCCGGTCATCAACACCACGTCGTCCCTCATCGCGCTGTC
GCTGCTCACCATGCTGGCCTACCTCGTGAGCCGGCCGCTGCTGACGCTGGGCGACGGGCCGACGACGACAGCGGTGCCGG
TCGGCATCGCCCTCGTGCTCTACGGGATGCTGGTGCTCGCGACCCGGCGGCACGCGGTCTCCCAGCTGCTCGGCTTCCTC
ATGCTCGACAACGGCATCGCCACCGTCGCCTTCCTCATCGCGGGAGGTGTGCCGCTGGTCGTCGAGCTCGGCGTGTCGCT
GGACGTGCTGCTGGTGGTGCTGATCCTGCAGGTGCTGACCAGCCACATCCGCACCGAGTTCGGCGACGCCGATCTCGACG
ACCTCTCGGAGCTGCGCGACTGA

Upstream 100 bases:

>100_bases
TCCTGGCCAAGGTGCGGCTGTTCCGGGTGCCCGAGCTGCTTGCCGGCTCCTTCGTGCTCGCCCTCCTCGCGGTGACCGCG
TCCTACCTGGTGGCGAGCTG

Downstream 100 bases:

>100_bases
TGGCCATCCTCGTCCTGCTCCCCCTGGCTGCCTGCGCGGTGCTGGCCGCCGCCACCGCGATCCTGCGGAACCGGTTCCTC
AGCCGGTACGCCGTCGTCGC

Product: putative hydrogenase HycP

Products: H2; oxidized ferredoxin [C]

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAAETFAQLVGLSTGVLLLSAVLLVWRRSLHAQVALLATQGVALAVLVLVLGLHEDDAELLAVAALVLVLKAVVLPRILI
RTVARLGVGVREETPVINTTSSLIALSLLTMLAYLVSRPLLTLGDGPTTTAVPVGIALVLYGMLVLATRRHAVSQLLGFL
MLDNGIATVAFLIAGGVPLVVELGVSLDVLLVVLILQVLTSHIRTEFGDADLDDLSELRD

Sequences:

>Translated_220_residues
MAAETFAQLVGLSTGVLLLSAVLLVWRRSLHAQVALLATQGVALAVLVLVLGLHEDDAELLAVAALVLVLKAVVLPRILI
RTVARLGVGVREETPVINTTSSLIALSLLTMLAYLVSRPLLTLGDGPTTTAVPVGIALVLYGMLVLATRRHAVSQLLGFL
MLDNGIATVAFLIAGGVPLVVELGVSLDVLLVVLILQVLTSHIRTEFGDADLDDLSELRD
>Mature_219_residues
AAETFAQLVGLSTGVLLLSAVLLVWRRSLHAQVALLATQGVALAVLVLVLGLHEDDAELLAVAALVLVLKAVVLPRILIR
TVARLGVGVREETPVINTTSSLIALSLLTMLAYLVSRPLLTLGDGPTTTAVPVGIALVLYGMLVLATRRHAVSQLLGFLM
LDNGIATVAFLIAGGVPLVVELGVSLDVLLVVLILQVLTSHIRTEFGDADLDDLSELRD

Specific function: Unknown

COG id: COG4237

COG function: function code C; Hydrogenase 4 membrane component (E)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23114; Mature: 22983

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAETFAQLVGLSTGVLLLSAVLLVWRRSLHAQVALLATQGVALAVLVLVLGLHEDDAEL
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAVAALVLVLKAVVLPRILIRTVARLGVGVREETPVINTTSSLIALSLLTMLAYLVSRPL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LTLGDGPTTTAVPVGIALVLYGMLVLATRRHAVSQLLGFLMLDNGIATVAFLIAGGVPLV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
VELGVSLDVLLVVLILQVLTSHIRTEFGDADLDDLSELRD
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure 
AAETFAQLVGLSTGVLLLSAVLLVWRRSLHAQVALLATQGVALAVLVLVLGLHEDDAEL
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAVAALVLVLKAVVLPRILIRTVARLGVGVREETPVINTTSSLIALSLLTMLAYLVSRPL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
LTLGDGPTTTAVPVGIALVLYGMLVLATRRHAVSQLLGFLMLDNGIATVAFLIAGGVPLV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
VELGVSLDVLLVVLILQVLTSHIRTEFGDADLDDLSELRD
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]