Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119718654

Identifier: 119718654

GI number: 119718654

Start: 4688125

End: 4689570

Strand: Reverse

Name: 119718654

Synonym: Noca_4435

Alternate gene names: NA

Gene position: 4689570-4688125 (Counterclockwise)

Preceding gene: 119718656

Following gene: 119718650

Centisome position: 94.06

GC content: 77.66

Gene sequence:

>1446_bases
GTGAGGGGCGCGCGCACGGTGGTCCTGGTGGGCGTGGGCCTGCTGGTCCTGCTCGCCGGCCCGGTGGCGCTCCTGCTCGC
CGGGCTGACGCTGTACTTCCCGCGGGTGCGGGCGTGGCTGCGGCCGAGCCGCCGGGTGGTCGCGTGGTGGCTGGTGGCGG
TCCTGGCCGTGGCCGGCCTGGCGGTCGTCGTGCCCGACGGGTGGCTGCCGATCGCGCCGGGTCCGGGCACGTGGGCGACG
CCGTCGTACGTCGGGCGCCCCGTGGTCGGCGGCGCCGAGCACGGGCCTGCGGGGGAGTCGCCGCAGGTGCGCACCCGGTC
CTACGGCCTCGACGACTGCCGCCGGCTCGAGGTGGACCCGCACGGCCGCCTGGTCGCGGTGTGCGGCGACGCCGGCAGTC
CCGTGCTGCGGCTCGTCGACGCCGAGAGCCTGCGCCAGCGGGCGACCAAGGACCTCCCCGCCCGCGGCGCGGGCTGTCCG
GCGGCCTTCGACCTCGACACGGACGGCCGGGTGGTCGTGGCAGCCGGGGACCGGCTGCTGGTGGTCGGCACCGCCGACGC
CGACGACGAGCCGGACCTGACCACCGAGGCCACGATCGACCTGGGCATCGCCGCCGACGACTGTGTCGTCGGGGTCGCGG
CCGCGGGCGAGCGCACCTGGTTCGTCTCGCGTGCGGGGGTGGCCGGCGTCGTCGCGGGGGACCGGGTCGCGACCGTCGAC
CTCGACGACACCGTGGACCGGCCGCTCGCGGCCGTCGCCGCCGGCGCCTACGTCGCCGGCGCCCAGGCACTCCACCGGGT
GGTGCTCACCGGCGGGCGTGTCACGGTCGCCTGGAGCTCGGCGTACGACGGCGGCGGCGAGCGCGGTGCCGCCCCCGTGC
CGCTGCCGTCGGGCCTGGTGGCGGTCGCGGACAACCGCGAGCCGCGGCTCCAGGTGGTCTTCCACCGCGCCGACACCGGC
GCGCCCGTGTGCCGGACCGAGGTCTTCGGCGACGACGCCGGGGCGACCGACGGCGGGCTGGTGGCCGCGGGCGACGCCGT
GGTCGTGCAGAACTCCCACGGCTACGACGGGCCGCTCTCCACGGTCCTGGGGCGCACCACCGACCGCGGCATCGCGCGGG
TCGCGGTCGTGGACGGCGAGTGCCGGGTCACCTGGTCGACGGAGCTGGACGTGCCGAGCGGCGCCCCGGCGGTGTCGGTG
GCGGACGGGATCGTCTACGCCTACGTCAAGCGGCACAGCTGGCTCGGTGTGGACGCGTGGTACCTCACCGCCCTCGACCT
GGACACCGGCCGGCTGCTGTGGGGGCGCCGCACCGGCCTCGGCGTGCTCCGTGACAACCACCACGGCGAGGTCACCCTCG
GCCCGGGCCGGGCGGCGTACGTCCCGGTCCTCGGCGGCCTGGTCCGGGTCCGCGACCGTGAGGTGGACCCGCAGGATCAG
GGGTAG

Upstream 100 bases:

>100_bases
CACGTCCGAGAGTCGCTTCATGCGCCCACTGTGCTCCGTCGAGCCGCCCCGGCCAAGGGCTGCCCCGGACCTACGATCGT
GGCGGGATGAGGCGGTCGAG

Downstream 100 bases:

>100_bases
CGGATGCCGGTGGTCTGCTCGCTGAGCTCCCACAGCCGCCGCTGGGCGGCCTGGTCGTGGGACAGCTTGTTGCTGGTGGT
CACGTGCGGGACGCCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT
PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP
AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD
LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG
APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV
ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ
G

Sequences:

>Translated_481_residues
MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT
PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP
AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD
LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG
APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV
ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ
G
>Mature_481_residues
MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT
PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP
AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD
LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG
APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV
ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49824; Mature: 49824

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCE
AVVVPDGWLPIAPGPGTWATPSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDP
EEEECCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHEEEECC
HGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCPAAFDLDTDGRVVVAAGDRLL
CCCEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCEEE
VVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD
EEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEEE
LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCCEE
AVADNREPRLQVVFHRADTGAPVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLS
EEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCEEEEECCCCCCCCHH
TVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSVADGIVYAYVKRHSWLGVDAW
HHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEHHCCEEEEEEHHCCCCCCCEE
YLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ
EEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEHHHHCCEEEEECCCCCCCCC
G
C
>Mature Secondary Structure
MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCE
AVVVPDGWLPIAPGPGTWATPSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDP
EEEECCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHEEEECC
HGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCPAAFDLDTDGRVVVAAGDRLL
CCCEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCEEE
VVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD
EEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEEE
LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLV
CCCHHCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCCEE
AVADNREPRLQVVFHRADTGAPVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLS
EEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCEEEEECCCCCCCCHH
TVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSVADGIVYAYVKRHSWLGVDAW
HHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEHHCCEEEEEEHHCCCCCCCEE
YLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ
EEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEHHHHCCEEEEECCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA