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The map label for this gene is pecS [H]

Identifier: 119718585

GI number: 119718585

Start: 4617340

End: 4617837

Strand: Reverse

Name: pecS [H]

Synonym: Noca_4366

Alternate gene names: 119718585

Gene position: 4617837-4617340 (Counterclockwise)

Preceding gene: 119718587

Following gene: 119718582

Centisome position: 92.62

GC content: 73.49

Gene sequence:

>498_bases
ATGGCGAGCGACCTGGATCACGTCGGCCGGATCATGGCGCAGTGGCACGAGCAGCGCCCCGACCTGGACCCCTCTCCCCA
GGGCATCATCGGCCGCCTGCACCGGGTGGCCGCGCGGCTCACCGAGGAGCTGGTGGAGGTGTACGCCGGGTTCGGCCTCG
GCGAGGGCGAGTTCGATGTGCTGGCGACGCTGCGCCGCACAGGAGCGCCGTACGAGCTCACGCCCGGCGACCTGGCTGCC
TCGACGATGGTCTCGTCGGGCGCCGTCACCAAGCGCGTCGACCGCTGCGTCGAGCACGGCTGGGTCACCCGCCGGGTGGG
TGAGGGCGACGCCCGCAGCCGGGTGGTCGCGCTCACCCCGGCCGGCTTCGACCTCATCGACCGCGCCTTCGAGGCCCACA
TGGCCAACGAGCACCGGCTGGTCGGGTCGCTCACCGAGCTGGAGCGCGCCCGCCTGGCGCACCTGCTGGAGGCATGGGGC
CGCAGCCTCGGTGTCTGA

Upstream 100 bases:

>100_bases
CCGAGCCCCACGCGATCGGGGCCAGGGCCGTCAGGCTCAACGTACCCCAGGTAGTTTCCACGGAAGACATAATAGTTTCC
GTGTCAGATATATTCCGGCC

Downstream 100 bases:

>100_bases
GGGACCGAGGCCGAGCGGAGCGCCGGGCTACTCCGCGGAGCCGTCGATCACGCACGCCTCGTCGATCAGCCGCTGGGCCG
CCTCGCGGGTCCGCGCGCCG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MASDLDHVGRIMAQWHEQRPDLDPSPQGIIGRLHRVAARLTEELVEVYAGFGLGEGEFDVLATLRRTGAPYELTPGDLAA
STMVSSGAVTKRVDRCVEHGWVTRRVGEGDARSRVVALTPAGFDLIDRAFEAHMANEHRLVGSLTELERARLAHLLEAWG
RSLGV

Sequences:

>Translated_165_residues
MASDLDHVGRIMAQWHEQRPDLDPSPQGIIGRLHRVAARLTEELVEVYAGFGLGEGEFDVLATLRRTGAPYELTPGDLAA
STMVSSGAVTKRVDRCVEHGWVTRRVGEGDARSRVVALTPAGFDLIDRAFEAHMANEHRLVGSLTELERARLAHLLEAWG
RSLGV
>Mature_164_residues
ASDLDHVGRIMAQWHEQRPDLDPSPQGIIGRLHRVAARLTEELVEVYAGFGLGEGEFDVLATLRRTGAPYELTPGDLAAS
TMVSSGAVTKRVDRCVEHGWVTRRVGEGDARSRVVALTPAGFDLIDRAFEAHMANEHRLVGSLTELERARLAHLLEAWGR
SLGV

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18076; Mature: 17945

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDLDHVGRIMAQWHEQRPDLDPSPQGIIGRLHRVAARLTEELVEVYAGFGLGEGEFDV
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LATLRRTGAPYELTPGDLAASTMVSSGAVTKRVDRCVEHGWVTRRVGEGDARSRVVALTP
HHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECC
AGFDLIDRAFEAHMANEHRLVGSLTELERARLAHLLEAWGRSLGV
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASDLDHVGRIMAQWHEQRPDLDPSPQGIIGRLHRVAARLTEELVEVYAGFGLGEGEFDV
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LATLRRTGAPYELTPGDLAASTMVSSGAVTKRVDRCVEHGWVTRRVGEGDARSRVVALTP
HHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECC
AGFDLIDRAFEAHMANEHRLVGSLTELERARLAHLLEAWGRSLGV
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]