Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119718502

Identifier: 119718502

GI number: 119718502

Start: 4525730

End: 4526056

Strand: Reverse

Name: 119718502

Synonym: Noca_4283

Alternate gene names: NA

Gene position: 4526056-4525730 (Counterclockwise)

Preceding gene: 119718503

Following gene: 119718501

Centisome position: 90.78

GC content: 69.11

Gene sequence:

>327_bases
GTGACCAGCTGGCACCCGGTGGCGAGCGTCAAGGACCTGGAAGCACGCAAGAAGACGGCCGTCGAGGTCGACGGCACGAC
GATCGCGCTGTTCTACATCCGCGGCCACGTCTACGCGCTGCACGACACCTGCATCCACGAGCAGCGGCAGCTGAGCAAGG
GCGCCGTCCTGTTCGGCAAGGTCGTCTGCCCGGGCCACCAGTGGAAGTTCGACCCTGCGTCGGGGGAGCCCGACGGCCAG
GACGGCTGCCAGCCGACGTACCCGGTGCGGGTGGCGGAGGACGGGACGATCTCGGTCGCCCTCGAGACCTCGGTGGTGAC
CCGATGA

Upstream 100 bases:

>100_bases
CGTCGCAGCGCGGCGGCGACCACCCGGCACCGGCTGCCCGGACCACGAGGCCCACAACACGGGGCCCAGCACGAGGCCCG
ATGATCGAAGGGAGCTGTCG

Downstream 100 bases:

>100_bases
GCGACCCCACGGTGGTCATCATCGGCGGCGGCCAGGCCGGCGCGGTCGCCACGCGCGCCCTGCGCCGCAAGGGTCACGCC
GGGCGGATCGTCCTGGTGGG

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Rieske Region; Dioxygenase Ferredoxin Component

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTSWHPVASVKDLEARKKTAVEVDGTTIALFYIRGHVYALHDTCIHEQRQLSKGAVLFGKVVCPGHQWKFDPASGEPDGQ
DGCQPTYPVRVAEDGTISVALETSVVTR

Sequences:

>Translated_108_residues
MTSWHPVASVKDLEARKKTAVEVDGTTIALFYIRGHVYALHDTCIHEQRQLSKGAVLFGKVVCPGHQWKFDPASGEPDGQ
DGCQPTYPVRVAEDGTISVALETSVVTR
>Mature_107_residues
TSWHPVASVKDLEARKKTAVEVDGTTIALFYIRGHVYALHDTCIHEQRQLSKGAVLFGKVVCPGHQWKFDPASGEPDGQD
GCQPTYPVRVAEDGTISVALETSVVTR

Specific function: Unknown

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11807; Mature: 11676

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSWHPVASVKDLEARKKTAVEVDGTTIALFYIRGHVYALHDTCIHEQRQLSKGAVLFGK
CCCCCCCCCCHHCCCCCCEEEEECCCEEEEEEEECEEEEEHHHHHHHHHHCCCCCEEEEE
VVCPGHQWKFDPASGEPDGQDGCQPTYPVRVAEDGTISVALETSVVTR
EECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEECC
>Mature Secondary Structure 
TSWHPVASVKDLEARKKTAVEVDGTTIALFYIRGHVYALHDTCIHEQRQLSKGAVLFGK
CCCCCCCCCHHCCCCCCEEEEECCCEEEEEEEECEEEEEHHHHHHHHHHCCCCCEEEEE
VVCPGHQWKFDPASGEPDGQDGCQPTYPVRVAEDGTISVALETSVVTR
EECCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA