| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is pstS3 [H]
Identifier: 119718482
GI number: 119718482
Start: 4503383
End: 4504495
Strand: Reverse
Name: pstS3 [H]
Synonym: Noca_4263
Alternate gene names: 119718482
Gene position: 4504495-4503383 (Counterclockwise)
Preceding gene: 119718483
Following gene: 119718481
Centisome position: 90.35
GC content: 70.71
Gene sequence:
>1113_bases GTGATTCGCACTTCCATCCGCCGGGCCGTGGTGCCCGGGATCGCCGTCCTCGCGCTCGCCCTCACGGGCTGTGGCGCCGG CAACGAGAGCGACTCCGGCAGCGACAGCGGCTCGGGCAACGGCGACAGCAGCCTCTCCGGCGACCTCAGCGGCGGTGGCT CGTCGGCACAGCAGGCCGCCATGGGCGCCTGGGCGGTCGGGTTCCAGGACGCCAACTCCGGCGTGACGATCAACTACGAC CCGATCGGGTCGGGTGGTGGCCGCGAGAACTTCATCTCCGGTGCCTTCCCGTTCGCGGGCAGCGACGCCTACCTCACCGA CGACGAGGGCGAGCTCTCCAAGGCGCAGGAGCAGTGCGGCGGGACCGTGATCGAGGTTCCCGACTACGTCAGCCCGATCG CGATCGCCTACAACCTGCCCGGCGTCGACGACCTGAACCTCGCGCCCGCGACCCTGGCCGGCATCATGACCGGCGCGATC ACCCAGTGGGACGACCCGGCGATCGCCGCGGACAACCCGGACGCCGAGCTCCCCGCCGAGCGGATCAACGCGGTGCACCG CTCCGACGAGTCGGGCACCACCGAGAACTTCACCGACTACCTCGACGCCGTCGCCGGCGACGTGTGGGACGCCGGTGTGG TGGAGACCTGGCCGAGCAACTACGGCGGCGAGGGCGCCAAGGGCACCTCCGGTGTCGTCCAGACCATCGGCAACTCGGAG TACTCCATCGGCTACGCCGACGCCAGCCAGACCGGTGACCTCGGCCAGGCCAACATCAAGGTCGGTGAGGAGTACGTCGC CCCGTCCGCGGAGGCCGCCGCGAAGATCCTCGACGTGTCGCCGGAAGCCGACGTCGCGACCGACACCCAGCTGGTCTTCG ACCTCGACCACACCACCGAGGAGGCCGGCGTCTACCCGATCGTGCTGACGTCCTACCTGCTCGCCTGCGGCTCGTACGAC GACGCCGCGACCGCCGAGCTGGTCAAGGCGTTCGCCGGGTACATCCTCAGCGACGAGGGCCAGCAGCAGGCCGCCTCCGA GGCGGGCTCCGCCCCGCTGTCGAGCGACCTGGCCGCGAAGGCGCAGGACATCGTGGCCCAGATCGGCAGTTGA
Upstream 100 bases:
>100_bases GTTCGAGTTCACCGCTCGTTCACCGACGACCCCGGAACCGTCCACCTCTGCTGCCTAACTTCGGTGCTGTCCTAGACGAC AAGACATCAGGAGCTTCGAA
Downstream 100 bases:
>100_bases CGATCAATCGCAGTAACGTCGGGCGAGGGGTCGGGCCATTGAAGGTGGCCGGGCCCCTCGCTCCACGTGTTCCAGACGAG CAGGAGATCCAGAGGTGAGC
Product: phosphate ABC transporter, periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP 3; PstS-3 [H]
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MIRTSIRRAVVPGIAVLALALTGCGAGNESDSGSDSGSGNGDSSLSGDLSGGGSSAQQAAMGAWAVGFQDANSGVTINYD PIGSGGGRENFISGAFPFAGSDAYLTDDEGELSKAQEQCGGTVIEVPDYVSPIAIAYNLPGVDDLNLAPATLAGIMTGAI TQWDDPAIAADNPDAELPAERINAVHRSDESGTTENFTDYLDAVAGDVWDAGVVETWPSNYGGEGAKGTSGVVQTIGNSE YSIGYADASQTGDLGQANIKVGEEYVAPSAEAAAKILDVSPEADVATDTQLVFDLDHTTEEAGVYPIVLTSYLLACGSYD DAATAELVKAFAGYILSDEGQQQAASEAGSAPLSSDLAAKAQDIVAQIGS
Sequences:
>Translated_370_residues MIRTSIRRAVVPGIAVLALALTGCGAGNESDSGSDSGSGNGDSSLSGDLSGGGSSAQQAAMGAWAVGFQDANSGVTINYD PIGSGGGRENFISGAFPFAGSDAYLTDDEGELSKAQEQCGGTVIEVPDYVSPIAIAYNLPGVDDLNLAPATLAGIMTGAI TQWDDPAIAADNPDAELPAERINAVHRSDESGTTENFTDYLDAVAGDVWDAGVVETWPSNYGGEGAKGTSGVVQTIGNSE YSIGYADASQTGDLGQANIKVGEEYVAPSAEAAAKILDVSPEADVATDTQLVFDLDHTTEEAGVYPIVLTSYLLACGSYD DAATAELVKAFAGYILSDEGQQQAASEAGSAPLSSDLAAKAQDIVAQIGS >Mature_370_residues MIRTSIRRAVVPGIAVLALALTGCGAGNESDSGSDSGSGNGDSSLSGDLSGGGSSAQQAAMGAWAVGFQDANSGVTINYD PIGSGGGRENFISGAFPFAGSDAYLTDDEGELSKAQEQCGGTVIEVPDYVSPIAIAYNLPGVDDLNLAPATLAGIMTGAI TQWDDPAIAADNPDAELPAERINAVHRSDESGTTENFTDYLDAVAGDVWDAGVVETWPSNYGGEGAKGTSGVVQTIGNSE YSIGYADASQTGDLGQANIKVGEEYVAPSAEAAAKILDVSPEADVATDTQLVFDLDHTTEEAGVYPIVLTSYLLACGSYD DAATAELVKAFAGYILSDEGQQQAASEAGSAPLSSDLAAKAQDIVAQIGS
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=273, Percent_Identity=31.5018315018315, Blast_Score=102, Evalue=4e-23,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 37445; Mature: 37445
Theoretical pI: Translated: 3.53; Mature: 3.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTSIRRAVVPGIAVLALALTGCGAGNESDSGSDSGSGNGDSSLSGDLSGGGSSAQQAA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH MGAWAVGFQDANSGVTINYDPIGSGGGRENFISGAFPFAGSDAYLTDDEGELSKAQEQCG HHHHEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHC GTVIEVPDYVSPIAIAYNLPGVDDLNLAPATLAGIMTGAITQWDDPAIAADNPDAELPAE CEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH RINAVHRSDESGTTENFTDYLDAVAGDVWDAGVVETWPSNYGGEGAKGTSGVVQTIGNSE HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC YSIGYADASQTGDLGQANIKVGEEYVAPSAEAAAKILDVSPEADVATDTQLVFDLDHTTE EEEEECCCCCCCCCCCCEEEECHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHH EAGVYPIVLTSYLLACGSYDDAATAELVKAFAGYILSDEGQQQAASEAGSAPLSSDLAAK HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCHHHHHH AQDIVAQIGS HHHHHHHCCC >Mature Secondary Structure MIRTSIRRAVVPGIAVLALALTGCGAGNESDSGSDSGSGNGDSSLSGDLSGGGSSAQQAA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH MGAWAVGFQDANSGVTINYDPIGSGGGRENFISGAFPFAGSDAYLTDDEGELSKAQEQCG HHHHEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHC GTVIEVPDYVSPIAIAYNLPGVDDLNLAPATLAGIMTGAITQWDDPAIAADNPDAELPAE CEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH RINAVHRSDESGTTENFTDYLDAVAGDVWDAGVVETWPSNYGGEGAKGTSGVVQTIGNSE HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC YSIGYADASQTGDLGQANIKVGEEYVAPSAEAAAKILDVSPEADVATDTQLVFDLDHTTE EEEEECCCCCCCCCCCCEEEECHHHCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHH EAGVYPIVLTSYLLACGSYDDAATAELVKAFAGYILSDEGQQQAASEAGSAPLSSDLAAK HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCHHHHHH AQDIVAQIGS HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA