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The map label for this gene is glnR [H]

Identifier: 119718453

GI number: 119718453

Start: 4474230

End: 4474520

Strand: Reverse

Name: glnR [H]

Synonym: Noca_4234

Alternate gene names: 119718453

Gene position: 4474520-4474230 (Counterclockwise)

Preceding gene: 119718455

Following gene: 119718451

Centisome position: 89.74

GC content: 74.57

Gene sequence:

>291_bases
ATGACCGAGCGCACCCGCGGCGTGTTCGCGATCTCGGTGGCGGCCGACATGGTGGCGATGCAGATCCAGAACCTGCGGGT
CTACGAGCGCCGCGGCCTGGTCGACCCCGACCGCACCGCCGGCGGCACCCGCCTCTACAGCCCCGCCGACATCGACCGGC
TGCACCGGATCCGCGACCTGCTGGCCGCGGGCCTCAACCTGGCCGGCATCGCCGAGGTGCTCCGCCTCGAGGACCGGGTC
CGCCGGCTCGAGGGCGAGGTCGAGCGGCTACGCGGCCGGCGTACGCCGTAG

Upstream 100 bases:

>100_bases
CTCGACCCTGGACGATGAAGCTGCATCGTCCAGGCACGAGTTTCATCGGCCGGCCGATGAAACTTGCCGGAGCCAGCCAC
CCACCCAGGAAGGAGCCACC

Downstream 100 bases:

>100_bases
CCGCCGCCCGGCCAGCACCACCGCCGCCCCGCCGAGCCCGCCGAGGGTGTTGGCGACCACGTCGGTGAACGTCGCGGACC
GCTCCGGCAGGAACAGCCCC

Product: regulatory protein MerR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MTERTRGVFAISVAADMVAMQIQNLRVYERRGLVDPDRTAGGTRLYSPADIDRLHRIRDLLAAGLNLAGIAEVLRLEDRV
RRLEGEVERLRGRRTP

Sequences:

>Translated_96_residues
MTERTRGVFAISVAADMVAMQIQNLRVYERRGLVDPDRTAGGTRLYSPADIDRLHRIRDLLAAGLNLAGIAEVLRLEDRV
RRLEGEVERLRGRRTP
>Mature_95_residues
TERTRGVFAISVAADMVAMQIQNLRVYERRGLVDPDRTAGGTRLYSPADIDRLHRIRDLLAAGLNLAGIAEVLRLEDRVR
RLEGEVERLRGRRTP

Specific function: Repressor for the glnRA operon. Binds specifically to the promoter region of the glnRA operon [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 10883; Mature: 10752

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERTRGVFAISVAADMVAMQIQNLRVYERRGLVDPDRTAGGTRLYSPADIDRLHRIRDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LAAGLNLAGIAEVLRLEDRVRRLEGEVERLRGRRTP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TERTRGVFAISVAADMVAMQIQNLRVYERRGLVDPDRTAGGTRLYSPADIDRLHRIRDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LAAGLNLAGIAEVLRLEDRVRRLEGEVERLRGRRTP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]