| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718278
Identifier: 119718278
GI number: 119718278
Start: 4283200
End: 4284963
Strand: Reverse
Name: 119718278
Synonym: Noca_4059
Alternate gene names: NA
Gene position: 4284963-4283200 (Counterclockwise)
Preceding gene: 119718281
Following gene: 119718277
Centisome position: 85.94
GC content: 76.53
Gene sequence:
>1764_bases GTGGTCGTCGGCGGCCTGGTCGCGCTGCCCGCCGGGCCCGCGGCCGCCGTCAGCACCGGCCGGCCGATCGCGGTCGCCGC GGCCGACGACGGGACGTCGTACGTCGGCTATGCCGCCGGCCACCGGCTGCTCCGGCTCGACGCCGCCGGCGGGGTGGCCG GCTCGGTGCCGCTGGACCAGGACGCGCCCGTCACGGCCCTCGACGTGGGGCCCGACGGCAACGTCTGGGTCCACTACGGC GCCAGCGTGAGCGAGCTCGCGCCCGACGGCGCCGTCCGCACCCACTTCCCGGTCGCCGGCGGGGCGTGCCCGGTCGACCG GGCGCACGACCCGGCGCGGTACGGCGGCCTCGAGGTGACCCGGGACGCGGTGTACGTCGCCGGTCGCTGTGCCGCCACGG TCGGCATCTACCGCCCCGACGGCGAGCTGCTGGCGAGCGTCGACCTGCCGGGGCGGGCCTACCCGGGCGACGTCGTCCTC GCCCCGGCGGCCAAGTCCCTGCCCGCGCGGATGTACGTGTCGGTGCCGGACGCCGGCCGGGTCTACGCCTACAACACCGC GAGCCTGCGCGCGGACCCGAAGCCCGCGCGGACGCTGGCGATCAAGCGGTTCTTCGGCTATCGCTCGCCCGCACCCGGGC CGCTGGCCGCCGACGAGAAGGGCCAGCTCGCCGTCGTGGACGTCGCCAACAACGCGGTGCACTTCTACAACGGCCCCGAG GACTACTGGTACTACCGCACCCTCGGCCACCCGCCCGACCCGGCGTCCGACCGCGGGTTCCTCGATCAGCCGACCGCGTT CGACAACGCGGACGGCAGCTTCCGCGACGGCTTCTGGGTCGCCGACACCGGCAACGGGCGGGTGCAGCACTGGGACCACC TCGGCACCACCGACTGGATGGCCGACGCGCTGCCGCCGGGCGACCCCGGCGCCCCGGTCAACGTCGGGCTGCCGCGGATC ACCGGATCGCCGTACGCCGGGCGGGTGCTCGACTGCGAGCCCGGGACGTGGGACGGCGCGGTGGCGTCGTACCGGCTGGC GTGGCTGCGCGACGGGCTGCCGGTCCCCGGCGCCGACGGCGCCACGTACACCGTCACCTCCCGTGACGTGGCGACCGCGC TGACCTGCACCGTGACCGCCGTGGCCGCGGACGGCGCGAGCTCGGCGCCGAGCGCCAGCGAGGTGTTCGCGATCCCCGGC CCGCACTCGCCGCCCTACGTCCTGGACCGTCCGGTGATCAGCGGCCAGCCCACCTCCGGTGCCATCCTGCGGTGCGGCAA CGGGACCTGGACCGGGCGACCCACGTCGTACCTCCGCGGCTGGCTGCGCGACGGCCAGCTCCTGCCCGGCACGAACGCCC CGGAGTACCTCGTCACCGACAACGACCGCTACCACGAGCTGACCTGCCGGGTCGCCGCGGTGAACCGGAACGGCGCCGGC AAGGTCGCGCTCAGCGACCCGGTCGCCGTCGACGACGGCAGCAGTGGTGGCCACGTCGGCCCGCCGGTGAGCACCGCGCG GCCGCGGATCGTCGGCCGGGCCAAGGTCGGGGCGGTGCTGTACTGCGACCCCGGGCGGTGGCGCAACGCGCCGGTGCTCA CCTACGTGTGGCGCCGCGACGGCGCCGCGCTCGGCGGCTCGGAGAAGGACCGCTACGAGGTGCTCGGCGACGACCGCGGG CACCGGCTGACCTGCCTGGTCACCGGCACCAACCCGGCCGGCTCGGACCGGGCGAGCTCCGCGCCGGTGGTGCCCCGGGG CTGA
Upstream 100 bases:
>100_bases AGTCTACCGATTTCGGCCCCTCCGACCCGCATCGACAACTAGCCTCGGACCCGTGGGGGGAGCGCTGCGTGCTGCGCTGA CTGGGGGGCTCGCGACGACG
Downstream 100 bases:
>100_bases GGGCGGGCCCGTCCAGTTTCATCGGCCGGCCGATGAAACCCGTGCCTGGACGATGCAGCTTCATCGTCCAGGGTCGAGCT TTGTCGGCCGGCCGACGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MVVGGLVALPAGPAAAVSTGRPIAVAAADDGTSYVGYAAGHRLLRLDAAGGVAGSVPLDQDAPVTALDVGPDGNVWVHYG ASVSELAPDGAVRTHFPVAGGACPVDRAHDPARYGGLEVTRDAVYVAGRCAATVGIYRPDGELLASVDLPGRAYPGDVVL APAAKSLPARMYVSVPDAGRVYAYNTASLRADPKPARTLAIKRFFGYRSPAPGPLAADEKGQLAVVDVANNAVHFYNGPE DYWYYRTLGHPPDPASDRGFLDQPTAFDNADGSFRDGFWVADTGNGRVQHWDHLGTTDWMADALPPGDPGAPVNVGLPRI TGSPYAGRVLDCEPGTWDGAVASYRLAWLRDGLPVPGADGATYTVTSRDVATALTCTVTAVAADGASSAPSASEVFAIPG PHSPPYVLDRPVISGQPTSGAILRCGNGTWTGRPTSYLRGWLRDGQLLPGTNAPEYLVTDNDRYHELTCRVAAVNRNGAG KVALSDPVAVDDGSSGGHVGPPVSTARPRIVGRAKVGAVLYCDPGRWRNAPVLTYVWRRDGAALGGSEKDRYEVLGDDRG HRLTCLVTGTNPAGSDRASSAPVVPRG
Sequences:
>Translated_587_residues MVVGGLVALPAGPAAAVSTGRPIAVAAADDGTSYVGYAAGHRLLRLDAAGGVAGSVPLDQDAPVTALDVGPDGNVWVHYG ASVSELAPDGAVRTHFPVAGGACPVDRAHDPARYGGLEVTRDAVYVAGRCAATVGIYRPDGELLASVDLPGRAYPGDVVL APAAKSLPARMYVSVPDAGRVYAYNTASLRADPKPARTLAIKRFFGYRSPAPGPLAADEKGQLAVVDVANNAVHFYNGPE DYWYYRTLGHPPDPASDRGFLDQPTAFDNADGSFRDGFWVADTGNGRVQHWDHLGTTDWMADALPPGDPGAPVNVGLPRI TGSPYAGRVLDCEPGTWDGAVASYRLAWLRDGLPVPGADGATYTVTSRDVATALTCTVTAVAADGASSAPSASEVFAIPG PHSPPYVLDRPVISGQPTSGAILRCGNGTWTGRPTSYLRGWLRDGQLLPGTNAPEYLVTDNDRYHELTCRVAAVNRNGAG KVALSDPVAVDDGSSGGHVGPPVSTARPRIVGRAKVGAVLYCDPGRWRNAPVLTYVWRRDGAALGGSEKDRYEVLGDDRG HRLTCLVTGTNPAGSDRASSAPVVPRG >Mature_587_residues MVVGGLVALPAGPAAAVSTGRPIAVAAADDGTSYVGYAAGHRLLRLDAAGGVAGSVPLDQDAPVTALDVGPDGNVWVHYG ASVSELAPDGAVRTHFPVAGGACPVDRAHDPARYGGLEVTRDAVYVAGRCAATVGIYRPDGELLASVDLPGRAYPGDVVL APAAKSLPARMYVSVPDAGRVYAYNTASLRADPKPARTLAIKRFFGYRSPAPGPLAADEKGQLAVVDVANNAVHFYNGPE DYWYYRTLGHPPDPASDRGFLDQPTAFDNADGSFRDGFWVADTGNGRVQHWDHLGTTDWMADALPPGDPGAPVNVGLPRI TGSPYAGRVLDCEPGTWDGAVASYRLAWLRDGLPVPGADGATYTVTSRDVATALTCTVTAVAADGASSAPSASEVFAIPG PHSPPYVLDRPVISGQPTSGAILRCGNGTWTGRPTSYLRGWLRDGQLLPGTNAPEYLVTDNDRYHELTCRVAAVNRNGAG KVALSDPVAVDDGSSGGHVGPPVSTARPRIVGRAKVGAVLYCDPGRWRNAPVLTYVWRRDGAALGGSEKDRYEVLGDDRG HRLTCLVTGTNPAGSDRASSAPVVPRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61007; Mature: 61007
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVGGLVALPAGPAAAVSTGRPIAVAAADDGTSYVGYAAGHRLLRLDAAGGVAGSVPLDQ CEECEEEEECCCCHHHHCCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC DAPVTALDVGPDGNVWVHYGASVSELAPDGAVRTHFPVAGGACPVDRAHDPARYGGLEVT CCCEEEEEECCCCCEEEEECCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCEEEE RDAVYVAGRCAATVGIYRPDGELLASVDLPGRAYPGDVVLAPAAKSLPARMYVSVPDAGR CCEEEEECEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCEEEEEECCCCCE VYAYNTASLRADPKPARTLAIKRFFGYRSPAPGPLAADEKGQLAVVDVANNAVHFYNGPE EEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCC DYWYYRTLGHPPDPASDRGFLDQPTAFDNADGSFRDGFWVADTGNGRVQHWDHLGTTDWM CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHH ADALPPGDPGAPVNVGLPRITGSPYAGRVLDCEPGTWDGAVASYRLAWLRDGLPVPGADG HHCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCHHHHEEEEHHHCCCCCCCCCC ATYTVTSRDVATALTCTVTAVAADGASSAPSASEVFAIPGPHSPPYVLDRPVISGQPTSG CEEEEECCCHHEEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCEECCCCCCC AILRCGNGTWTGRPTSYLRGWLRDGQLLPGTNAPEYLVTDNDRYHELTCRVAAVNRNGAG CEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCC KVALSDPVAVDDGSSGGHVGPPVSTARPRIVGRAKVGAVLYCDPGRWRNAPVLTYVWRRD EEEECCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECC GAALGGSEKDRYEVLGDDRGHRLTCLVTGTNPAGSDRASSAPVVPRG CCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVVGGLVALPAGPAAAVSTGRPIAVAAADDGTSYVGYAAGHRLLRLDAAGGVAGSVPLDQ CEECEEEEECCCCHHHHCCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC DAPVTALDVGPDGNVWVHYGASVSELAPDGAVRTHFPVAGGACPVDRAHDPARYGGLEVT CCCEEEEEECCCCCEEEEECCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCEEEE RDAVYVAGRCAATVGIYRPDGELLASVDLPGRAYPGDVVLAPAAKSLPARMYVSVPDAGR CCEEEEECEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCEEEEEECCCCCE VYAYNTASLRADPKPARTLAIKRFFGYRSPAPGPLAADEKGQLAVVDVANNAVHFYNGPE EEEEECCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCC DYWYYRTLGHPPDPASDRGFLDQPTAFDNADGSFRDGFWVADTGNGRVQHWDHLGTTDWM CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHH ADALPPGDPGAPVNVGLPRITGSPYAGRVLDCEPGTWDGAVASYRLAWLRDGLPVPGADG HHCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCHHHHEEEEHHHCCCCCCCCCC ATYTVTSRDVATALTCTVTAVAADGASSAPSASEVFAIPGPHSPPYVLDRPVISGQPTSG CEEEEECCCHHEEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCEECCCCCCC AILRCGNGTWTGRPTSYLRGWLRDGQLLPGTNAPEYLVTDNDRYHELTCRVAAVNRNGAG CEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCC KVALSDPVAVDDGSSGGHVGPPVSTARPRIVGRAKVGAVLYCDPGRWRNAPVLTYVWRRD EEEECCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECC GAALGGSEKDRYEVLGDDRGHRLTCLVTGTNPAGSDRASSAPVVPRG CCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA