| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718233
Identifier: 119718233
GI number: 119718233
Start: 4236331
End: 4238016
Strand: Reverse
Name: 119718233
Synonym: Noca_4014
Alternate gene names: NA
Gene position: 4238016-4236331 (Counterclockwise)
Preceding gene: 119718234
Following gene: 119718232
Centisome position: 85.0
GC content: 74.08
Gene sequence:
>1686_bases ATGAAGTCGACCAGAGGCACGTGGAAACGCCTCGCCGCCCCGATCTCGGCCGCAGCACTCGCCGGCGTCGTTCTGCCGAT GTCGGCGAGTGCTCCCGCGGCCGGCCAGGACGACACCGCCAAGCCGGCGTTCAGCGGGTTCAGCTCCTCGGCGTGGGCGG CGCCGGTGAAGGTCGAGATCTACGAGCCGACCATCCCCATCCCGGCCAACCCGCAGATGGAGCTCGAGATGGGCTACTCC AAGGTGGAGGCCGACTCGGGCAGCTCGCTGGGACGCGCCAGCTGGCTGTGGCCCGGCGACTCGATCGGCGAGGGCGCGAA GACCGTCATCGAGAACCTCGGTCTGCCCGAGCAGCTCTCGGGGCCGCTGGCCGCCCAGGGCTACCCCGTCCAGGTCAACG CCTCGCAGCCCTCCGGGGAGGCGAAGGCGTCCGACGAGCCGTTCCCCGGCACGGTCATGCGCACCAGTGCCGGCGCGAAG ACCACCGTCGCGCAGGTCGGGTTCTCCCCCGACAACGAGGTCCGGGACGGATCCGGCGACGGAGGAGACGGCGGCGACGG AGGCGGTGCGCCCGGACTCCCGGGTGTCCCCGGCCTGCCTCCGATCCCGGGCCTGCCCGGCAGCGCCGGCGGCGGCGACC TCCTTCAGCAGTTCGGTCAGGCGATCACCGGCTCGGCCGGGCTGGCCGGCGCCGCCGACGACCCCCAGGACGACCCGCCG GGTGGCTCCGGCGCGCCCGGCCTGCCGCCCCAGGTCGCCGCTCTCGTCGACTTCGAGGGCTACGCCTCCACCAGCAAGAA CGTCGTGACCGACTCGAAGGTCGTGGCCTCGTCCCGCTCCGCGCTGGGCGACGTCTACCTGCTCGGCGGCACCGTCGTGC TCAACGGCGTCGTGGTGACCAGCACCAGCTCCAGCGACGGCGCCAAGGGCAGCTCCGGCGGCAAGGCGACGCTGGGCGGC CTGACGATCGCGGGCCAGGAGTTCTCCTTCGGGCCCGGTGGGGCCGAGGGGGCCGGCCAGCACGCCGACGTACCGGCCGT TCCCGACCAGGCGACCGCGGCCCTGGACCAGCTCGGTATCAAGCTGATCCTGCCGAAGCCCGACCTGGCGAAGCAGGGCG ACCAGGCCAGCAGCACCATGGCGGGACTCGTCGTCGAGATCGACACCGCCAAGCTGCGCGGTCAGCTCGACGCGCTCCCG ATCGACGACATCGTCAACGCCTTCCCGAACGACCCGCCCGACCTGAAGAAGGCCCTGCAGACCCTGGTCGGGCTCTCGCC GCGGATCGTGGTGACCCTCGGCAACGCGGGCAGCGAGGTCGACACGGTGCAGGGCATCGAGCTGCCCACCGGCGACCTCC CCGACAACGACCCGGCCGGGTCCGGGGACACCGGCGGTCCGGCCGCGGCCGGCGGGCCGACGGCCGCCGGCGGCTCCCCG TCGGCAATCGGACCCGGCCCGACGGGCAGTGCGCCGTCGGCGGCCGGTGACCTCGGGGACGCCCAGCTCACCGGATCGGG GCTCCCCCCGCTCTACTCCATCCCCGGCGCCATCCTCGTCGCGAGCCTGGCCCTGGCCGCCGTCGGCGGCACCTGGCTCC GCCGGATCGGCGCGATCGCGCTCGGTGGCGCCGGGTCCTGCACGCACGGCCTCGACAGCGGCCTGCCCGACCTCCGAAAG GCCTGA
Upstream 100 bases:
>100_bases CCGACTACGCGGCGGTGATGACCGGCGGCCGGATCGTGGCCACCGGCGAGCCCGCCGAGATCCTCGCCACCATGTCCGAC GTCATCCTCGGAGGTGCCGC
Downstream 100 bases:
>100_bases CCATGACCACCATGACACCAGGGATGACGCCCGCCGCGGAGCAGCCCGCCCCGGCCGCGCCGGCGCAGCGCCTCTCGATC GGCCTGCCCCGGGCCGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MKSTRGTWKRLAAPISAAALAGVVLPMSASAPAAGQDDTAKPAFSGFSSSAWAAPVKVEIYEPTIPIPANPQMELEMGYS KVEADSGSSLGRASWLWPGDSIGEGAKTVIENLGLPEQLSGPLAAQGYPVQVNASQPSGEAKASDEPFPGTVMRTSAGAK TTVAQVGFSPDNEVRDGSGDGGDGGDGGGAPGLPGVPGLPPIPGLPGSAGGGDLLQQFGQAITGSAGLAGAADDPQDDPP GGSGAPGLPPQVAALVDFEGYASTSKNVVTDSKVVASSRSALGDVYLLGGTVVLNGVVVTSTSSSDGAKGSSGGKATLGG LTIAGQEFSFGPGGAEGAGQHADVPAVPDQATAALDQLGIKLILPKPDLAKQGDQASSTMAGLVVEIDTAKLRGQLDALP IDDIVNAFPNDPPDLKKALQTLVGLSPRIVVTLGNAGSEVDTVQGIELPTGDLPDNDPAGSGDTGGPAAAGGPTAAGGSP SAIGPGPTGSAPSAAGDLGDAQLTGSGLPPLYSIPGAILVASLALAAVGGTWLRRIGAIALGGAGSCTHGLDSGLPDLRK A
Sequences:
>Translated_561_residues MKSTRGTWKRLAAPISAAALAGVVLPMSASAPAAGQDDTAKPAFSGFSSSAWAAPVKVEIYEPTIPIPANPQMELEMGYS KVEADSGSSLGRASWLWPGDSIGEGAKTVIENLGLPEQLSGPLAAQGYPVQVNASQPSGEAKASDEPFPGTVMRTSAGAK TTVAQVGFSPDNEVRDGSGDGGDGGDGGGAPGLPGVPGLPPIPGLPGSAGGGDLLQQFGQAITGSAGLAGAADDPQDDPP GGSGAPGLPPQVAALVDFEGYASTSKNVVTDSKVVASSRSALGDVYLLGGTVVLNGVVVTSTSSSDGAKGSSGGKATLGG LTIAGQEFSFGPGGAEGAGQHADVPAVPDQATAALDQLGIKLILPKPDLAKQGDQASSTMAGLVVEIDTAKLRGQLDALP IDDIVNAFPNDPPDLKKALQTLVGLSPRIVVTLGNAGSEVDTVQGIELPTGDLPDNDPAGSGDTGGPAAAGGPTAAGGSP SAIGPGPTGSAPSAAGDLGDAQLTGSGLPPLYSIPGAILVASLALAAVGGTWLRRIGAIALGGAGSCTHGLDSGLPDLRK A >Mature_561_residues MKSTRGTWKRLAAPISAAALAGVVLPMSASAPAAGQDDTAKPAFSGFSSSAWAAPVKVEIYEPTIPIPANPQMELEMGYS KVEADSGSSLGRASWLWPGDSIGEGAKTVIENLGLPEQLSGPLAAQGYPVQVNASQPSGEAKASDEPFPGTVMRTSAGAK TTVAQVGFSPDNEVRDGSGDGGDGGDGGGAPGLPGVPGLPPIPGLPGSAGGGDLLQQFGQAITGSAGLAGAADDPQDDPP GGSGAPGLPPQVAALVDFEGYASTSKNVVTDSKVVASSRSALGDVYLLGGTVVLNGVVVTSTSSSDGAKGSSGGKATLGG LTIAGQEFSFGPGGAEGAGQHADVPAVPDQATAALDQLGIKLILPKPDLAKQGDQASSTMAGLVVEIDTAKLRGQLDALP IDDIVNAFPNDPPDLKKALQTLVGLSPRIVVTLGNAGSEVDTVQGIELPTGDLPDNDPAGSGDTGGPAAAGGPTAAGGSP SAIGPGPTGSAPSAAGDLGDAQLTGSGLPPLYSIPGAILVASLALAAVGGTWLRRIGAIALGGAGSCTHGLDSGLPDLRK A
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54557; Mature: 54557
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTRGTWKRLAAPISAAALAGVVLPMSASAPAAGQDDTAKPAFSGFSSSAWAAPVKVEI CCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE YEPTIPIPANPQMELEMGYSKVEADSGSSLGRASWLWPGDSIGEGAKTVIENLGLPEQLS ECCCCCCCCCCCEEEECCCHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHC GPLAAQGYPVQVNASQPSGEAKASDEPFPGTVMRTSAGAKTTVAQVGFSPDNEVRDGSGD CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCC GGDGGDGGGAPGLPGVPGLPPIPGLPGSAGGGDLLQQFGQAITGSAGLAGAADDPQDDPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGSGAPGLPPQVAALVDFEGYASTSKNVVTDSKVVASSRSALGDVYLLGGTVVLNGVVVT CCCCCCCCCHHHEEEEECCCCCCCCCCEECCHHHHHHHHHHHCEEEEECCEEEEEEEEEE STSSSDGAKGSSGGKATLGGLTIAGQEFSFGPGGAEGAGQHADVPAVPDQATAALDQLGI ECCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCE KLILPKPDLAKQGDQASSTMAGLVVEIDTAKLRGQLDALPIDDIVNAFPNDPPDLKKALQ EEEECCCCHHHCCCHHHHHHEEEEEEEECHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHH TLVGLSPRIVVTLGNAGSEVDTVQGIELPTGDLPDNDPAGSGDTGGPAAAGGPTAAGGSP HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAIGPGPTGSAPSAAGDLGDAQLTGSGLPPLYSIPGAILVASLALAAVGGTWLRRIGAIA CCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCEE LGGAGSCTHGLDSGLPDLRKA ECCCCCCCCCHHCCCCHHHCC >Mature Secondary Structure MKSTRGTWKRLAAPISAAALAGVVLPMSASAPAAGQDDTAKPAFSGFSSSAWAAPVKVEI CCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE YEPTIPIPANPQMELEMGYSKVEADSGSSLGRASWLWPGDSIGEGAKTVIENLGLPEQLS ECCCCCCCCCCCEEEECCCHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHC GPLAAQGYPVQVNASQPSGEAKASDEPFPGTVMRTSAGAKTTVAQVGFSPDNEVRDGSGD CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCC GGDGGDGGGAPGLPGVPGLPPIPGLPGSAGGGDLLQQFGQAITGSAGLAGAADDPQDDPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGSGAPGLPPQVAALVDFEGYASTSKNVVTDSKVVASSRSALGDVYLLGGTVVLNGVVVT CCCCCCCCCHHHEEEEECCCCCCCCCCEECCHHHHHHHHHHHCEEEEECCEEEEEEEEEE STSSSDGAKGSSGGKATLGGLTIAGQEFSFGPGGAEGAGQHADVPAVPDQATAALDQLGI ECCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCE KLILPKPDLAKQGDQASSTMAGLVVEIDTAKLRGQLDALPIDDIVNAFPNDPPDLKKALQ EEEECCCCHHHCCCHHHHHHEEEEEEEECHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHH TLVGLSPRIVVTLGNAGSEVDTVQGIELPTGDLPDNDPAGSGDTGGPAAAGGPTAAGGSP HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAIGPGPTGSAPSAAGDLGDAQLTGSGLPPLYSIPGAILVASLALAAVGGTWLRRIGAIA CCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCEE LGGAGSCTHGLDSGLPDLRKA ECCCCCCCCCHHCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA