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The map label for this gene is ydjH [H]

Identifier: 119718217

GI number: 119718217

Start: 4219565

End: 4220491

Strand: Reverse

Name: ydjH [H]

Synonym: Noca_3998

Alternate gene names: 119718217

Gene position: 4220491-4219565 (Counterclockwise)

Preceding gene: 119718218

Following gene: 119718212

Centisome position: 84.65

GC content: 75.62

Gene sequence:

>927_bases
ATGAAGATCGCCACCGTCGGCGTGCACGTCCTCGACACCCACGTGCTCGGCATCGAGTCGATCCCCGCGCGCTCCGACGG
CCAACTGGTCGAGACGATCCGGATGTCCCCGGCCGGCACGGCGGGCGGTACGGCGGTCGTGCTCAGCCGGCTCGGCGCCG
AGGTGCGGAGCTTCGGCGCCGTCGGCGCGGACCCGATCGGCAGCACCCTCCTCGCGCTGCTCGAGCGCGAGGGGGTCGAC
GTCACGGGGCTGGTCCGCAAGCCCGACCAGCAGACCTCGGCCTCGGTGCTGCCGGTGCGGCCCAACGGCGACCGCCCGGC
CTGGCACTGCATCGGCGCGAACGGGGCGTTCACCCTCGACGACCTCGACCTCGCTGCCCTCGACGGGTGCACCCACGTGC
ACCTGGGCGGGCCGGAGTTCCTCGGCGGCGAGGCCGCCGGCAAGCTGCTCGAGCACGCGCGCTCGCTGGGGGCGACCACC
TCGCTGGACCTGCTGGCTCCGGGCGACCCCGACCTGCTCGCCTGGGTGGCCGACGCGCTCCCGCACACCGACTACCTGCT
CCCCAACGACGAGCAGGTGCTCGGCTTCACCGGCGCGTCCTCGATCGCCGACGGCGCCCGGGCGCTCGTCGCCGCCGGCG
CGGGCTGCGTGGCGGTGACCCAGGGCAGCCGCGGCGCGCTGGTCGTGACCGCGGACGAGGTGGTCGAGGTGCCGGCGTAC
GCCATCGAGGTCGTCGACACCACCGGCTGCGGCGACGCCTTCTCCGCGGGCTTCCTCCGCGGGCTGTCGCTGGGCCGTGA
CCTCCGGGACGCCGCGGAGCTCGGCTGCGCCACCGCGGCCCAGGTCGCGCAGGGCCTCGGCACCGACGCCGGCGACTACT
CGCTGGACTCGGTGCTGGCCTTCGCCGGGTCGACCGCCACCCGCTGA

Upstream 100 bases:

>100_bases
CGCTGGTCGAGGAGGGCATCGCGATGGTCACCGCCTACCTCGAGCGCTACGCCACGCCGGCAGGCCTCACCGGGCCCAGC
GGCAGCACCCAGGAGAGCAG

Downstream 100 bases:

>100_bases
CCCTGGCCCTGCCGCCGGGGCCGGGCCAGCCGGTCCAGGAACGCGACGAGCAGCGCCTCGCGCATCGCGGGGGACGCGAG
GTCGAGCATCGCGTTGACCT

Product: ribokinase-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKIATVGVHVLDTHVLGIESIPARSDGQLVETIRMSPAGTAGGTAVVLSRLGAEVRSFGAVGADPIGSTLLALLEREGVD
VTGLVRKPDQQTSASVLPVRPNGDRPAWHCIGANGAFTLDDLDLAALDGCTHVHLGGPEFLGGEAAGKLLEHARSLGATT
SLDLLAPGDPDLLAWVADALPHTDYLLPNDEQVLGFTGASSIADGARALVAAGAGCVAVTQGSRGALVVTADEVVEVPAY
AIEVVDTTGCGDAFSAGFLRGLSLGRDLRDAAELGCATAAQVAQGLGTDAGDYSLDSVLAFAGSTATR

Sequences:

>Translated_308_residues
MKIATVGVHVLDTHVLGIESIPARSDGQLVETIRMSPAGTAGGTAVVLSRLGAEVRSFGAVGADPIGSTLLALLEREGVD
VTGLVRKPDQQTSASVLPVRPNGDRPAWHCIGANGAFTLDDLDLAALDGCTHVHLGGPEFLGGEAAGKLLEHARSLGATT
SLDLLAPGDPDLLAWVADALPHTDYLLPNDEQVLGFTGASSIADGARALVAAGAGCVAVTQGSRGALVVTADEVVEVPAY
AIEVVDTTGCGDAFSAGFLRGLSLGRDLRDAAELGCATAAQVAQGLGTDAGDYSLDSVLAFAGSTATR
>Mature_308_residues
MKIATVGVHVLDTHVLGIESIPARSDGQLVETIRMSPAGTAGGTAVVLSRLGAEVRSFGAVGADPIGSTLLALLEREGVD
VTGLVRKPDQQTSASVLPVRPNGDRPAWHCIGANGAFTLDDLDLAALDGCTHVHLGGPEFLGGEAAGKLLEHARSLGATT
SLDLLAPGDPDLLAWVADALPHTDYLLPNDEQVLGFTGASSIADGARALVAAGAGCVAVTQGSRGALVVTADEVVEVPAY
AIEVVDTTGCGDAFSAGFLRGLSLGRDLRDAAELGCATAAQVAQGLGTDAGDYSLDSVLAFAGSTATR

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Escherichia coli, GI87081971, Length=296, Percent_Identity=27.027027027027, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI87082343, Length=305, Percent_Identity=27.8688524590164, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789775, Length=257, Percent_Identity=29.9610894941634, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17532905, Length=310, Percent_Identity=26.4516129032258, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322565, Length=266, Percent_Identity=28.1954887218045, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173
- InterPro:   IPR002139 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: NA

Molecular weight: Translated: 31041; Mature: 31041

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIATVGVHVLDTHVLGIESIPARSDGQLVETIRMSPAGTAGGTAVVLSRLGAEVRSFGA
CEEEEEEEEEEHHEEECCCCCCCCCCCCEEHHEECCCCCCCCHHHHHHHHHHHHHHHHCC
VGADPIGSTLLALLEREGVDVTGLVRKPDQQTSASVLPVRPNGDRPAWHCIGANGAFTLD
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCEEEC
DLDLAALDGCTHVHLGGPEFLGGEAAGKLLEHARSLGATTSLDLLAPGDPDLLAWVADAL
CCCHHHHCCCCEEECCCCHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
PHTDYLLPNDEQVLGFTGASSIADGARALVAAGAGCVAVTQGSRGALVVTADEVVEVPAY
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHCCCE
AIEVVDTTGCGDAFSAGFLRGLSLGRDLRDAAELGCATAAQVAQGLGTDAGDYSLDSVLA
EEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHH
FAGSTATR
HCCCCCCC
>Mature Secondary Structure
MKIATVGVHVLDTHVLGIESIPARSDGQLVETIRMSPAGTAGGTAVVLSRLGAEVRSFGA
CEEEEEEEEEEHHEEECCCCCCCCCCCCEEHHEECCCCCCCCHHHHHHHHHHHHHHHHCC
VGADPIGSTLLALLEREGVDVTGLVRKPDQQTSASVLPVRPNGDRPAWHCIGANGAFTLD
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCEEEC
DLDLAALDGCTHVHLGGPEFLGGEAAGKLLEHARSLGATTSLDLLAPGDPDLLAWVADAL
CCCHHHHCCCCEEECCCCHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
PHTDYLLPNDEQVLGFTGASSIADGARALVAAGAGCVAVTQGSRGALVVTADEVVEVPAY
CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHCCCE
AIEVVDTTGCGDAFSAGFLRGLSLGRDLRDAAELGCATAAQVAQGLGTDAGDYSLDSVLA
EEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHH
FAGSTATR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]