| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718202
Identifier: 119718202
GI number: 119718202
Start: 4202745
End: 4203617
Strand: Reverse
Name: 119718202
Synonym: Noca_3983
Alternate gene names: NA
Gene position: 4203617-4202745 (Counterclockwise)
Preceding gene: 119718203
Following gene: 119718201
Centisome position: 84.31
GC content: 73.77
Gene sequence:
>873_bases GTGGACCAGCAGCCGACGAAACCGCTCGTGCTCCTGGTGACCTGCGCCGAGTGGCCCGACGGCGAGCCCGGGCACGGCGC CCTCGACGTCGCGCTCGAGGCCCAGGGCCTCACCGCCCGGTGGGTGCAGTGGGACGACCTCAGCGTCGACTGGGGCGCGG CCGACGTGGTCGCGGTGCGCTCCACGTGGGACTACGACCGCCGGCTCGGCGAGTTCCTCGGCTGGGCGTCCGGGGTCGGC CCGGCGCTGCTGAACGGCGTGGACGTGTTCCGGTGGAACACCGACAAGCGCTACCTGGTCCACCTCCAGTCGACCGGCCT GCCGGTGGTGCCCACGGTTGCCGCGGACACGGTGTTCGACGTGCGTGCCGCCGCCGACCGGTACGGCGTCGCGGTGGTCA AGCCGCGGGTGGGCGCCGGCGGCCGCGGCCTCGAGGTGGTCTCCGACGGACGCGTGTGGCTGCCCAGCCCGGACGGGCAC CCCGGCCCGTGGATCGTCCAGCCCCTGGTCGAGTCGATCCACCACGACGGCGAGACCTCGGTGTTCATGATCGCCGGGCA CCCGGTCAGCCAGGTGCAGAAGCTGCCCAGCACCACCGACATCCGGGTGCACGAGCAGTTCGGGGGCACGATGCGCTCGG TCGAGCTCACCAAGGAGGCGGCGCTGCTGGCGGCCCAGGCGGTCGCCGCCGTCGTGGACCTGCTCGGCGACGAGGTCGTC TACGCCCGGGTCGACATGATGCGCCACGAGGGCCGGCTGGTGGTCAGCGAGGTCGAGCTGACCGAGCCCGGGCTCTACCT CGACGTGCTCCCGCTCAACGCGCTGCCGTTCGCCGAGACGGTCGCCGCCCGGGCGCTGCCGCGCACCTGGTGA
Upstream 100 bases:
>100_bases GGTCGTGCGCCAGAGCAGCTGAACCGGAGCAGCGGGGCAGCCGGCCCAACCGGTCTGAACCCGCTCCGCGCCCGGGCTCC GGTTGTCCTAATCTTCCCCC
Downstream 100 bases:
>100_bases CCCGGCGCCGGTCCCGGCGTACGCGCTCCGGACCCGCCCGCCCGATCCCCGCCCGCTCGTGCCTCGCGCGGGAGATCCTG GTGTCTCGACCCGCGATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MDQQPTKPLVLLVTCAEWPDGEPGHGALDVALEAQGLTARWVQWDDLSVDWGAADVVAVRSTWDYDRRLGEFLGWASGVG PALLNGVDVFRWNTDKRYLVHLQSTGLPVVPTVAADTVFDVRAAADRYGVAVVKPRVGAGGRGLEVVSDGRVWLPSPDGH PGPWIVQPLVESIHHDGETSVFMIAGHPVSQVQKLPSTTDIRVHEQFGGTMRSVELTKEAALLAAQAVAAVVDLLGDEVV YARVDMMRHEGRLVVSEVELTEPGLYLDVLPLNALPFAETVAARALPRTW
Sequences:
>Translated_290_residues MDQQPTKPLVLLVTCAEWPDGEPGHGALDVALEAQGLTARWVQWDDLSVDWGAADVVAVRSTWDYDRRLGEFLGWASGVG PALLNGVDVFRWNTDKRYLVHLQSTGLPVVPTVAADTVFDVRAAADRYGVAVVKPRVGAGGRGLEVVSDGRVWLPSPDGH PGPWIVQPLVESIHHDGETSVFMIAGHPVSQVQKLPSTTDIRVHEQFGGTMRSVELTKEAALLAAQAVAAVVDLLGDEVV YARVDMMRHEGRLVVSEVELTEPGLYLDVLPLNALPFAETVAARALPRTW >Mature_290_residues MDQQPTKPLVLLVTCAEWPDGEPGHGALDVALEAQGLTARWVQWDDLSVDWGAADVVAVRSTWDYDRRLGEFLGWASGVG PALLNGVDVFRWNTDKRYLVHLQSTGLPVVPTVAADTVFDVRAAADRYGVAVVKPRVGAGGRGLEVVSDGRVWLPSPDGH PGPWIVQPLVESIHHDGETSVFMIAGHPVSQVQKLPSTTDIRVHEQFGGTMRSVELTKEAALLAAQAVAAVVDLLGDEVV YARVDMMRHEGRLVVSEVELTEPGLYLDVLPLNALPFAETVAARALPRTW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31428; Mature: 31428
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQQPTKPLVLLVTCAEWPDGEPGHGALDVALEAQGLTARWVQWDDLSVDWGAADVVAVR CCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEECCCCCEEEEEE STWDYDRRLGEFLGWASGVGPALLNGVDVFRWNTDKRYLVHLQSTGLPVVPTVAADTVFD CCCCHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCEEEEEEECCCCCEEECHHCCHHHH VRAAADRYGVAVVKPRVGAGGRGLEVVSDGRVWLPSPDGHPGPWIVQPLVESIHHDGETS HHHHHHHCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCCCCHHHHHHHHHHCCCCCCE VFMIAGHPVSQVQKLPSTTDIRVHEQFGGTMRSVELTKEAALLAAQAVAAVVDLLGDEVV EEEEECCCHHHHHHCCCCCCEEEEHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE YARVDMMRHEGRLVVSEVELTEPGLYLDVLPLNALPFAETVAARALPRTW EHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure MDQQPTKPLVLLVTCAEWPDGEPGHGALDVALEAQGLTARWVQWDDLSVDWGAADVVAVR CCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEECCCCCEEEEEE STWDYDRRLGEFLGWASGVGPALLNGVDVFRWNTDKRYLVHLQSTGLPVVPTVAADTVFD CCCCHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCEEEEEEECCCCCEEECHHCCHHHH VRAAADRYGVAVVKPRVGAGGRGLEVVSDGRVWLPSPDGHPGPWIVQPLVESIHHDGETS HHHHHHHCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCCCCHHHHHHHHHHCCCCCCE VFMIAGHPVSQVQKLPSTTDIRVHEQFGGTMRSVELTKEAALLAAQAVAAVVDLLGDEVV EEEEECCCHHHHHHCCCCCCEEEEHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE YARVDMMRHEGRLVVSEVELTEPGLYLDVLPLNALPFAETVAARALPRTW EHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA