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The map label for this gene is 119718197

Identifier: 119718197

GI number: 119718197

Start: 4197088

End: 4197612

Strand: Reverse

Name: 119718197

Synonym: Noca_3978

Alternate gene names: NA

Gene position: 4197612-4197088 (Counterclockwise)

Preceding gene: 119718199

Following gene: 119718196

Centisome position: 84.19

GC content: 74.86

Gene sequence:

>525_bases
GTGGAGAGTCGACGGGATCGCTTCGAGGAGGTCGCGCCCGGGCTGATCGAGCCGCTGCGGCGGTTCCTGGCCCGCCGCAC
CGATCCGGCCACCGCCGAGGACGTGCTCGCCGAGACGCTGCTGGTGTGCTGGCGCCGCGCCGAGGAGCTACCGGCGGACC
CGCTGCCCTGGGCGTACGCCGTGGCCCGCAACTGCCTGCGCAACGCCGAGCGCGCCGTGCGCCGCCAGCAGCGGGTGGCG
GCCCGGATCGCCACGGTGGACCCGCCCGCGGAGGCCACCTCGGCGATCGAGCCCGACCAGGACGTGCGCGACGCGCTGCT
GCGGATGCGCGCCGACGACGCCGAGCTGCTCCGGCTGTGGGCCTGGGAGCAGCTCGAGCCTGCCGAGATCGCGGTGGTGC
TCGGGATCACCGCCAACGCCGCGAGCGTCCGGCTGCACCGCGCCCGCACGAAGCTGGCCGACCAGCTCGGTAAGACCGGC
GCGGGTGCCGGACATGAGGAGTCGAGAGAGGGGAGAAGGTCATGA

Upstream 100 bases:

>100_bases
CGGGGGTGGGAACGCGTCTGGGTGCGGGGCTGGGCGTGGCAGGCACCCGGGCAGGGTACGGCGTCCGCGGCCGATCGCGC
AGGTGTGTGAGGGTGGAGAC

Downstream 100 bases:

>100_bases
GCGACGAGCTGCGCGACCGGCTGCGGGCGGCCGACCCGGCCTCCTCCCTGCCGCCGGCCGACCCCGACGGGACGGCCCGA
CTCCTGGAGGACGTCATGAG

Product: sigma-70, region 4 type 2

Products: NA

Alternate protein names: RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily RpoE

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MESRRDRFEEVAPGLIEPLRRFLARRTDPATAEDVLAETLLVCWRRAEELPADPLPWAYAVARNCLRNAERAVRRQQRVA
ARIATVDPPAEATSAIEPDQDVRDALLRMRADDAELLRLWAWEQLEPAEIAVVLGITANAASVRLHRARTKLADQLGKTG
AGAGHEESREGRRS

Sequences:

>Translated_174_residues
MESRRDRFEEVAPGLIEPLRRFLARRTDPATAEDVLAETLLVCWRRAEELPADPLPWAYAVARNCLRNAERAVRRQQRVA
ARIATVDPPAEATSAIEPDQDVRDALLRMRADDAELLRLWAWEQLEPAEIAVVLGITANAASVRLHRARTKLADQLGKTG
AGAGHEESREGRRS
>Mature_174_residues
MESRRDRFEEVAPGLIEPLRRFLARRTDPATAEDVLAETLLVCWRRAEELPADPLPWAYAVARNCLRNAERAVRRQQRVA
ARIATVDPPAEATSAIEPDQDVRDALLRMRADDAELLRLWAWEQLEPAEIAVVLGITANAASVRLHRARTKLADQLGKTG
AGAGHEESREGRRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19478; Mature: 19478

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRRDRFEEVAPGLIEPLRRFLARRTDPATAEDVLAETLLVCWRRAEELPADPLPWAYA
CCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VARNCLRNAERAVRRQQRVAARIATVDPPAEATSAIEPDQDVRDALLRMRADDAELLRLW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
AWEQLEPAEIAVVLGITANAASVRLHRARTKLADQLGKTGAGAGHEESREGRRS
HHCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MESRRDRFEEVAPGLIEPLRRFLARRTDPATAEDVLAETLLVCWRRAEELPADPLPWAYA
CCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VARNCLRNAERAVRRQQRVAARIATVDPPAEATSAIEPDQDVRDALLRMRADDAELLRLW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
AWEQLEPAEIAVVLGITANAASVRLHRARTKLADQLGKTGAGAGHEESREGRRS
HHCCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA