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The map label for this gene is secY [H]

Identifier: 119718105

GI number: 119718105

Start: 4100167

End: 4101480

Strand: Reverse

Name: secY [H]

Synonym: Noca_3885

Alternate gene names: 119718105

Gene position: 4101480-4100167 (Counterclockwise)

Preceding gene: 119718106

Following gene: 119718104

Centisome position: 82.26

GC content: 64.61

Gene sequence:

>1314_bases
GTGCTGAGCGCGTTCGCGAACGCTTTCCGGACCCCGGACCTGCGGCGCAAGCTGCTGTTCGTCGTCTTGATCATCGGGGT
CTTCCGGCTCGGATCCCAGGTCCCGACCCCCGGCGTCGACGTCGGCAACGTGCAGGCCTGCGTCGACATCGCGACCGAGG
GCAGCAACGCCGACCTCTACAGCCTGGTCAACATGTTCTCCGGCGGAGCGCTGCTCCAGCTGACGATCTTCGCGCTCGGC
ATCATGCCGTACATCACGGCGAGCATCATCCTGCAGCTGCTGGTCGTGGTCATCCCCCGGCTCGAGGCGCTGAAGAAGGA
GGGCCAGTCCGGCCAGACCAAGATCACCCAGTACACCCGCTACCTGACGCTGGGCCTCGCGGTCCTCCAGGCGACGGGCA
TCGTGGCCCTGGCCCGCTCGGGCAACCTGCTGCAGGGCTGCGACCCCAACACGTTCCCGCTGCTCCACGACAACGGGACC
TCGACGTTCCTCGTCATGGTGGTCACGATGACCGCCGGCACGGCCGTGATCATGTGGCTCGGCGAGCTGATCACCGAGCA
CGGCATCGGCAACGGCATGTCGCTGCTGATCTTCACCCAGATCATCGCGGGCTTCCCGTCCTCGCTGTGGTCGGTCCAGA
GCTCCAAGGGCTGGTGGATCTTCGGCATCGTGATGGTCACCGGCCTGGTGATCGTCGCGGCGGTCATCTTCGTCGAGCAG
GCCCAGCGCCGGATCCCGGTGCAGTACGCCCGCCGGATGGTGGGCCGCAAGATGTTCGGCGGCAGCTCGACCTACATCCC
GCTCAAGGTGAACCAGGCCGGCGTCATCCCGGTCATCTTCGCGTCGTCGCTGCTCTACCTGCCCGCCATGCTCGTCTCGT
TCAACCCGAACGCCGACTCGAGATGGGCGAACTGGATCAACTCCTACCTGGTGCGCGGCGACCACCCGCTCTACATGCTC
ACGTTCTTCCTGCTGATCATCTTCTTCACCTACTTCTACGTGTCGATCACGTTCAACCCGAACGAGGTGGCCGACAACAT
GAAGAAGTACGGCGGCTTCATCCCCGGGATCCGGGCGGGCAAGCCGACCGAGGACTACCTGTCCTACGTCCTGTCCCGCA
TCACGCTGCCCGGCTCGCTCTACCTCGGTCTGATCTCCCTGATCCCGTTGATCGCCTTCGCCGTGATCGGTGCCAACCAG
AACTTCCCGTTCGGTGGCACCAGCATCCTGATCATGGTCGGCGTGGGGCTGGACACGGTGAAGCAGATCGAGAGCCAGCT
CCAGCAGCGCAACTACGAAGGATTCCTGCGCTGA

Upstream 100 bases:

>100_bases
CCGTCGCGCTTTCCGGGCCCGTCACCCTGCCTGTTAGGCTTCCCCGGGTCCTTGCGGTCGAGTCGCAGGGGCCGCTTCAC
GCTTGGAGAAAGAGGATCTC

Downstream 100 bases:

>100_bases
TATGCGATTGATCACCAACGACTGCGGCGCCGCGACGCGCTCTGCGACAATGCCGCTGCCATGCGCCTGATCATCATGGG
CCCCCCGGGGGCCGGCAAGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MLSAFANAFRTPDLRRKLLFVVLIIGVFRLGSQVPTPGVDVGNVQACVDIATEGSNADLYSLVNMFSGGALLQLTIFALG
IMPYITASIILQLLVVVIPRLEALKKEGQSGQTKITQYTRYLTLGLAVLQATGIVALARSGNLLQGCDPNTFPLLHDNGT
STFLVMVVTMTAGTAVIMWLGELITEHGIGNGMSLLIFTQIIAGFPSSLWSVQSSKGWWIFGIVMVTGLVIVAAVIFVEQ
AQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGVIPVIFASSLLYLPAMLVSFNPNADSRWANWINSYLVRGDHPLYML
TFFLLIIFFTYFYVSITFNPNEVADNMKKYGGFIPGIRAGKPTEDYLSYVLSRITLPGSLYLGLISLIPLIAFAVIGANQ
NFPFGGTSILIMVGVGLDTVKQIESQLQQRNYEGFLR

Sequences:

>Translated_437_residues
MLSAFANAFRTPDLRRKLLFVVLIIGVFRLGSQVPTPGVDVGNVQACVDIATEGSNADLYSLVNMFSGGALLQLTIFALG
IMPYITASIILQLLVVVIPRLEALKKEGQSGQTKITQYTRYLTLGLAVLQATGIVALARSGNLLQGCDPNTFPLLHDNGT
STFLVMVVTMTAGTAVIMWLGELITEHGIGNGMSLLIFTQIIAGFPSSLWSVQSSKGWWIFGIVMVTGLVIVAAVIFVEQ
AQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGVIPVIFASSLLYLPAMLVSFNPNADSRWANWINSYLVRGDHPLYML
TFFLLIIFFTYFYVSITFNPNEVADNMKKYGGFIPGIRAGKPTEDYLSYVLSRITLPGSLYLGLISLIPLIAFAVIGANQ
NFPFGGTSILIMVGVGLDTVKQIESQLQQRNYEGFLR
>Mature_437_residues
MLSAFANAFRTPDLRRKLLFVVLIIGVFRLGSQVPTPGVDVGNVQACVDIATEGSNADLYSLVNMFSGGALLQLTIFALG
IMPYITASIILQLLVVVIPRLEALKKEGQSGQTKITQYTRYLTLGLAVLQATGIVALARSGNLLQGCDPNTFPLLHDNGT
STFLVMVVTMTAGTAVIMWLGELITEHGIGNGMSLLIFTQIIAGFPSSLWSVQSSKGWWIFGIVMVTGLVIVAAVIFVEQ
AQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGVIPVIFASSLLYLPAMLVSFNPNADSRWANWINSYLVRGDHPLYML
TFFLLIIFFTYFYVSITFNPNEVADNMKKYGGFIPGIRAGKPTEDYLSYVLSRITLPGSLYLGLISLIPLIAFAVIGANQ
NFPFGGTSILIMVGVGLDTVKQIESQLQQRNYEGFLR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=44.7795823665893, Blast_Score=301, Evalue=5e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47780; Mature: 47780

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAFANAFRTPDLRRKLLFVVLIIGVFRLGSQVPTPGVDVGNVQACVDIATEGSNADLY
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCHHH
SLVNMFSGGALLQLTIFALGIMPYITASIILQLLVVVIPRLEALKKEGQSGQTKITQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YLTLGLAVLQATGIVALARSGNLLQGCDPNTFPLLHDNGTSTFLVMVVTMTAGTAVIMWL
HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHH
GELITEHGIGNGMSLLIFTQIIAGFPSSLWSVQSSKGWWIFGIVMVTGLVIVAAVIFVEQ
HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGVIPVIFASSLLYLPAMLVSFNPNADS
HHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
RWANWINSYLVRGDHPLYMLTFFLLIIFFTYFYVSITFNPNEVADNMKKYGGFIPGIRAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCCCCCCCCCC
KPTEDYLSYVLSRITLPGSLYLGLISLIPLIAFAVIGANQNFPFGGTSILIMVGVGLDTV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHH
KQIESQLQQRNYEGFLR
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLSAFANAFRTPDLRRKLLFVVLIIGVFRLGSQVPTPGVDVGNVQACVDIATEGSNADLY
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCHHH
SLVNMFSGGALLQLTIFALGIMPYITASIILQLLVVVIPRLEALKKEGQSGQTKITQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YLTLGLAVLQATGIVALARSGNLLQGCDPNTFPLLHDNGTSTFLVMVVTMTAGTAVIMWL
HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHH
GELITEHGIGNGMSLLIFTQIIAGFPSSLWSVQSSKGWWIFGIVMVTGLVIVAAVIFVEQ
HHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AQRRIPVQYARRMVGRKMFGGSSTYIPLKVNQAGVIPVIFASSLLYLPAMLVSFNPNADS
HHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
RWANWINSYLVRGDHPLYMLTFFLLIIFFTYFYVSITFNPNEVADNMKKYGGFIPGIRAG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCCCCCCCCCC
KPTEDYLSYVLSRITLPGSLYLGLISLIPLIAFAVIGANQNFPFGGTSILIMVGVGLDTV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHH
KQIESQLQQRNYEGFLR
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA