| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717980
Identifier: 119717980
GI number: 119717980
Start: 3979126
End: 3981861
Strand: Reverse
Name: 119717980
Synonym: Noca_3758
Alternate gene names: NA
Gene position: 3981861-3979126 (Counterclockwise)
Preceding gene: 119717981
Following gene: 119717979
Centisome position: 79.86
GC content: 75.95
Gene sequence:
>2736_bases ATGGGCCGCGCACGGCGTACGACGGTGGCGGGCCTGGCGCTCGTCGTGAACCTCGCGGTGGGCATGACCCTCGCCCCGGG AGTCGCCCCCGCCACCGGCAGCACCCGGGCACCCGCGCTCGACGTCACCCTGTCGGCGCCGGGCGCCCGGGGCAGCTGGG AGGTCTCGCTCGTCGCGCCCGGCACGTACCGGCTGACCTGGCGCTCGCCGACGGACCTGCCGATCACCTCGGCACGCCCG GAGTTCCGGCTCGCCGGCGTGTTGCTGCCGGCCCCGTCGCTCGAGGCCGACGGCCGCACCCTGAGCCTGGTCGTCACCGC CGACACCGAGCCGCAGGTGGCCGACCTCGAGGTCAGCCTGTCCGGCCGGGTCCTGGACCGGCCCCGCGCCGCGCGCCCCA GCCCCGCGTCGTACGCCGAGCCGCGGGCGGGCGATCCGCTGCCGGTCGATCCGGGGGTCCGCGGGCCGTACGCGGTCACG AGCTCCGACTACGAGCTGTCCGACCTGGTCGTCCCCGAGCTCGACGCCCCGGTCGAGCGGATCGGCCACGTGGTGCTGCC GGTGCTGCCCGAGACGGCGGGCCCGGCGCCGCTGGTGCTGTTCCTGCACGGCCGCCACGACTACTGCTACGGCCACCCCG ACGACCCCCGGCCCGGGCCGGACTGGCCGTGCCCGGCGGGGACCCGGCCGGTCCCGAGCCAGCTCGGCTACCGCTACGTC CAGCGGCTGCTGGCCAGCCAGGGCTACGCCACCGTGTCGATCGCGGCCAACGGCATCAACGCCCAGGACTGGGTCGCCCG CGACGGCGGCGCCGACGCGCGCGCCCGGCTGGTCCGCTCGCACCTGGAGCAGTGGGCGGCGTGGGCCGCCGACGGCACCT ACGACGTGGACCCGAGCCGGGTCGTCCTGGTCGGCCACTCCCGCGGCGGGGAGGGCGTCGACCTGGCGAGCCTGACCACG CCGCTGGAGGCGCCGTACCGCATCGTCGGGCAGGTGCTGCTCGCGCCCACCGACTTCGCCCGGGCGGTCGCGGCCTACGT GCCGACCGTCGTGATGCTGCCCTACTGCGACGGCGACGTGTTCGACCTGCAGGGGCAGGCCTACACCGACCGCGCCCGGG ACCTGGCCGCCGACGACACCGCGCTGCGCAGCTCGGTGCTGGTGATGGGCGCCAACCACAACTTCTTCAACACCGAGTGG ACGCCGGGGCTCTCGGCGGCACCGTCGTGGGACGACGGCGACCTCGGTGGCGCGTGCCGGCCGGGCAGCGAGACCCGGCT GACCGCGGCCGAGCAGCGTGCGGTCGGGCGTACCTGGATCGCGGGGGCGGTCGCGTTCATGGCGGCCGGTGACCGGAGCG TGCTACCGATGTTCGACGGCAGCGACGTCGAGGTCGCCTCGGCCGGCGGCGCCGACGTGCGGACCCAGGCGCTCGGGCTG GGGCGCTCCCTGCGCCGACCCGGCGTGGACGCGGCCGCGGTCTCCGAGGTGCCGCGCGCGTCGCGGATCTGCGTGGGCAA GACCGGGCGCGACGAGCGGCTGTGCACCACGCAGAGCGACTCGGTCGCCCCGCACTGGGTCGCGCAGGGTGCCTGGAGCC GCCGCGTCCCGACCTCGCCGGCGTGGCAGGTGACCTGGCGCCGGACCGGCGCGAGTGGCGGCCTCCTCCTCGACCGGCCC TGGGACCTCAGCGAGGCCACCCGGCTCGACCTGCGCACCGTGGTCGCGCCCGAGCCGGGCCGGGTGCGGCTCGCCGTGCG CCTGCACGACGGCAGCGGGGCCACCGCGCTGCTCACGCCCGAGGCCGACGGCGTGCTGCGCCGCCTCCCGGGCCAGGTCT GGTGGACCAAGCTTCTCGCCCAGACCCTCCGGGTGCCTCTGGCGGGCGCGAGCGGCATCGACCTCAGCGACGTACGCCGC GTCGACCTGGTCGGGCGTAGCGACGCCGGCCAGGTGTGGGTGCTGGACCTCGCGGCCGTCTCCGAGGAGATCGCTCCGGT GCCCGAGAAGCGGCTGCCGCTGGTGCTCTTCCGCGACGTCAGGGTCCCCGAGGGTGACGCCGACGGGACGACCACGGCCG GCCTGTCCTTCGAGGTGGTCGGTGACCTCACGTCGCCGGCCCGGTTCACCTTCGTGGTGCTCGACCCGCGCAACTACCGT GCACCCCAGTCGGCCGCCGTCCGGGTGCCTGCGGGTACGACGCGCGGTTCGGTCGACGTCGCCTACGCAGCGGATCGCCG CGACGACCTCTACCGCAACCCGATCGTGCTCAACGTGTTCGGCGCCACCGGCGTGATGCCGGGACGGTTCACCCCGGTGC TGACCGTCCTCGACGACGACCCCGCGCCGACGGTGACGATCCGGGCGGCGCGGGCGCGCATCGTCGAGGGCGCCCTGGCA CGCTGGGTCGTCGAGCGCTCCGAGCCCGCCGACTACTACACCGGCATCCGGGCCCGGGTCGTCGACGACCGGAGCCCGGA CCAGCTGAGCGTGGACGACCTGCCGTCCGGCTGGCTGCGCCACCACGTGGCCGTCGTACCGCCGGCCGGGACCCCGCTGC ACGAGGTCGACCTGCGCTTCTTCGGGCTGATCGAGCCGGGTGAGACCGCGGACCGCTTCGCGATCCCGGTCCGTCGCGAC GGGCTGGACGAGGGCGCGGAGACCGTGATCCTGCGGATCCGGGTGCAGAAGGCCGGCGACCCGGTGGTGCGGACCGTGAC CGTCGGGGACGGGTGA
Upstream 100 bases:
>100_bases CGGCGTGCTCGCCTCACCGGTGCTGCGCCGCGTCGGTGATCCTGCGAGCAGGTGACCTTGGACCCTGCACCGGGCCGGAG GAGCGGACGCAGGGTGAGCC
Downstream 100 bases:
>100_bases TGCCCGGGCCGGGCCCGCGGGGCTGGACAGGAGTGGGCAGGATGGGCACGTGCGTGCTCTCGTGAAGACGACCGCCGGAC CCGGGCTCGAGCTCATCGAC
Product: secreted protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 911; Mature: 910
Protein sequence:
>911_residues MGRARRTTVAGLALVVNLAVGMTLAPGVAPATGSTRAPALDVTLSAPGARGSWEVSLVAPGTYRLTWRSPTDLPITSARP EFRLAGVLLPAPSLEADGRTLSLVVTADTEPQVADLEVSLSGRVLDRPRAARPSPASYAEPRAGDPLPVDPGVRGPYAVT SSDYELSDLVVPELDAPVERIGHVVLPVLPETAGPAPLVLFLHGRHDYCYGHPDDPRPGPDWPCPAGTRPVPSQLGYRYV QRLLASQGYATVSIAANGINAQDWVARDGGADARARLVRSHLEQWAAWAADGTYDVDPSRVVLVGHSRGGEGVDLASLTT PLEAPYRIVGQVLLAPTDFARAVAAYVPTVVMLPYCDGDVFDLQGQAYTDRARDLAADDTALRSSVLVMGANHNFFNTEW TPGLSAAPSWDDGDLGGACRPGSETRLTAAEQRAVGRTWIAGAVAFMAAGDRSVLPMFDGSDVEVASAGGADVRTQALGL GRSLRRPGVDAAAVSEVPRASRICVGKTGRDERLCTTQSDSVAPHWVAQGAWSRRVPTSPAWQVTWRRTGASGGLLLDRP WDLSEATRLDLRTVVAPEPGRVRLAVRLHDGSGATALLTPEADGVLRRLPGQVWWTKLLAQTLRVPLAGASGIDLSDVRR VDLVGRSDAGQVWVLDLAAVSEEIAPVPEKRLPLVLFRDVRVPEGDADGTTTAGLSFEVVGDLTSPARFTFVVLDPRNYR APQSAAVRVPAGTTRGSVDVAYAADRRDDLYRNPIVLNVFGATGVMPGRFTPVLTVLDDDPAPTVTIRAARARIVEGALA RWVVERSEPADYYTGIRARVVDDRSPDQLSVDDLPSGWLRHHVAVVPPAGTPLHEVDLRFFGLIEPGETADRFAIPVRRD GLDEGAETVILRIRVQKAGDPVVRTVTVGDG
Sequences:
>Translated_911_residues MGRARRTTVAGLALVVNLAVGMTLAPGVAPATGSTRAPALDVTLSAPGARGSWEVSLVAPGTYRLTWRSPTDLPITSARP EFRLAGVLLPAPSLEADGRTLSLVVTADTEPQVADLEVSLSGRVLDRPRAARPSPASYAEPRAGDPLPVDPGVRGPYAVT SSDYELSDLVVPELDAPVERIGHVVLPVLPETAGPAPLVLFLHGRHDYCYGHPDDPRPGPDWPCPAGTRPVPSQLGYRYV QRLLASQGYATVSIAANGINAQDWVARDGGADARARLVRSHLEQWAAWAADGTYDVDPSRVVLVGHSRGGEGVDLASLTT PLEAPYRIVGQVLLAPTDFARAVAAYVPTVVMLPYCDGDVFDLQGQAYTDRARDLAADDTALRSSVLVMGANHNFFNTEW TPGLSAAPSWDDGDLGGACRPGSETRLTAAEQRAVGRTWIAGAVAFMAAGDRSVLPMFDGSDVEVASAGGADVRTQALGL GRSLRRPGVDAAAVSEVPRASRICVGKTGRDERLCTTQSDSVAPHWVAQGAWSRRVPTSPAWQVTWRRTGASGGLLLDRP WDLSEATRLDLRTVVAPEPGRVRLAVRLHDGSGATALLTPEADGVLRRLPGQVWWTKLLAQTLRVPLAGASGIDLSDVRR VDLVGRSDAGQVWVLDLAAVSEEIAPVPEKRLPLVLFRDVRVPEGDADGTTTAGLSFEVVGDLTSPARFTFVVLDPRNYR APQSAAVRVPAGTTRGSVDVAYAADRRDDLYRNPIVLNVFGATGVMPGRFTPVLTVLDDDPAPTVTIRAARARIVEGALA RWVVERSEPADYYTGIRARVVDDRSPDQLSVDDLPSGWLRHHVAVVPPAGTPLHEVDLRFFGLIEPGETADRFAIPVRRD GLDEGAETVILRIRVQKAGDPVVRTVTVGDG >Mature_910_residues GRARRTTVAGLALVVNLAVGMTLAPGVAPATGSTRAPALDVTLSAPGARGSWEVSLVAPGTYRLTWRSPTDLPITSARPE FRLAGVLLPAPSLEADGRTLSLVVTADTEPQVADLEVSLSGRVLDRPRAARPSPASYAEPRAGDPLPVDPGVRGPYAVTS SDYELSDLVVPELDAPVERIGHVVLPVLPETAGPAPLVLFLHGRHDYCYGHPDDPRPGPDWPCPAGTRPVPSQLGYRYVQ RLLASQGYATVSIAANGINAQDWVARDGGADARARLVRSHLEQWAAWAADGTYDVDPSRVVLVGHSRGGEGVDLASLTTP LEAPYRIVGQVLLAPTDFARAVAAYVPTVVMLPYCDGDVFDLQGQAYTDRARDLAADDTALRSSVLVMGANHNFFNTEWT PGLSAAPSWDDGDLGGACRPGSETRLTAAEQRAVGRTWIAGAVAFMAAGDRSVLPMFDGSDVEVASAGGADVRTQALGLG RSLRRPGVDAAAVSEVPRASRICVGKTGRDERLCTTQSDSVAPHWVAQGAWSRRVPTSPAWQVTWRRTGASGGLLLDRPW DLSEATRLDLRTVVAPEPGRVRLAVRLHDGSGATALLTPEADGVLRRLPGQVWWTKLLAQTLRVPLAGASGIDLSDVRRV DLVGRSDAGQVWVLDLAAVSEEIAPVPEKRLPLVLFRDVRVPEGDADGTTTAGLSFEVVGDLTSPARFTFVVLDPRNYRA PQSAAVRVPAGTTRGSVDVAYAADRRDDLYRNPIVLNVFGATGVMPGRFTPVLTVLDDDPAPTVTIRAARARIVEGALAR WVVERSEPADYYTGIRARVVDDRSPDQLSVDDLPSGWLRHHVAVVPPAGTPLHEVDLRFFGLIEPGETADRFAIPVRRDG LDEGAETVILRIRVQKAGDPVVRTVTVGDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97009; Mature: 96878
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRARRTTVAGLALVVNLAVGMTLAPGVAPATGSTRAPALDVTLSAPGARGSWEVSLVAP CCCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC GTYRLTWRSPTDLPITSARPEFRLAGVLLPAPSLEADGRTLSLVVTADTEPQVADLEVSL CEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEE SGRVLDRPRAARPSPASYAEPRAGDPLPVDPGVRGPYAVTSSDYELSDLVVPELDAPVER CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHEECCCCCCCHHH IGHVVLPVLPETAGPAPLVLFLHGRHDYCYGHPDDPRPGPDWPCPAGTRPVPSQLGYRYV HCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH QRLLASQGYATVSIAANGINAQDWVARDGGADARARLVRSHLEQWAAWAADGTYDVDPSR HHHHHCCCCEEEEEEECCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE VVLVGHSRGGEGVDLASLTTPLEAPYRIVGQVLLAPTDFARAVAAYVPTVVMLPYCDGDV EEEEECCCCCCCEEEHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCE FDLQGQAYTDRARDLAADDTALRSSVLVMGANHNFFNTEWTPGLSAAPSWDDGDLGGACR EECCCCCHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGSETRLTAAEQRAVGRTWIAGAVAFMAAGDRSVLPMFDGSDVEVASAGGADVRTQALGL CCCCCEEEHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHC GRSLRRPGVDAAAVSEVPRASRICVGKTGRDERLCTTQSDSVAPHWVAQGAWSRRVPTSP CHHHCCCCCCHHHHHHCCCCCEEEECCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCC AWQVTWRRTGASGGLLLDRPWDLSEATRLDLRTVVAPEPGRVRLAVRLHDGSGATALLTP CEEEEEEECCCCCCEEEECCCCCCHHHEEEEEEEECCCCCCEEEEEEEECCCCCEEEECC EADGVLRRLPGQVWWTKLLAQTLRVPLAGASGIDLSDVRRVDLVGRSDAGQVWVLDLAAV CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCEEEEEECCCCCCCEEEEEHHHH SEEIAPVPEKRLPLVLFRDVRVPEGDADGTTTAGLSFEVVGDLTSPARFTFVVLDPRNYR HHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCEEEEEEECCCCCCEEEEEEECCCCCC APQSAAVRVPAGTTRGSVDVAYAADRRDDLYRNPIVLNVFGATGVMPGRFTPVLTVLDDD CCCCCEEEECCCCCCCCEEEEEECCCCCHHHCCCEEEEECCCCCCCCCCCCEEEEEECCC PAPTVTIRAARARIVEGALARWVVERSEPADYYTGIRARVVDDRSPDQLSVDDLPSGWLR CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCHHH HHVAVVPPAGTPLHEVDLRFFGLIEPGETADRFAIPVRRDGLDEGAETVILRIRVQKAGD CEEEEECCCCCCHHEECEEEEEEECCCCCCCCEECEEECCCCCCCCEEEEEEEEEECCCC PVVRTVTVGDG CEEEEEEECCC >Mature Secondary Structure GRARRTTVAGLALVVNLAVGMTLAPGVAPATGSTRAPALDVTLSAPGARGSWEVSLVAP CCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC GTYRLTWRSPTDLPITSARPEFRLAGVLLPAPSLEADGRTLSLVVTADTEPQVADLEVSL CEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEE SGRVLDRPRAARPSPASYAEPRAGDPLPVDPGVRGPYAVTSSDYELSDLVVPELDAPVER CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHEECCCCCCCHHH IGHVVLPVLPETAGPAPLVLFLHGRHDYCYGHPDDPRPGPDWPCPAGTRPVPSQLGYRYV HCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH QRLLASQGYATVSIAANGINAQDWVARDGGADARARLVRSHLEQWAAWAADGTYDVDPSR HHHHHCCCCEEEEEEECCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE VVLVGHSRGGEGVDLASLTTPLEAPYRIVGQVLLAPTDFARAVAAYVPTVVMLPYCDGDV EEEEECCCCCCCEEEHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCE FDLQGQAYTDRARDLAADDTALRSSVLVMGANHNFFNTEWTPGLSAAPSWDDGDLGGACR EECCCCCHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PGSETRLTAAEQRAVGRTWIAGAVAFMAAGDRSVLPMFDGSDVEVASAGGADVRTQALGL CCCCCEEEHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHC GRSLRRPGVDAAAVSEVPRASRICVGKTGRDERLCTTQSDSVAPHWVAQGAWSRRVPTSP CHHHCCCCCCHHHHHHCCCCCEEEECCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCC AWQVTWRRTGASGGLLLDRPWDLSEATRLDLRTVVAPEPGRVRLAVRLHDGSGATALLTP CEEEEEEECCCCCCEEEECCCCCCHHHEEEEEEEECCCCCCEEEEEEEECCCCCEEEECC EADGVLRRLPGQVWWTKLLAQTLRVPLAGASGIDLSDVRRVDLVGRSDAGQVWVLDLAAV CCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCEEEEEECCCCCCCEEEEEHHHH SEEIAPVPEKRLPLVLFRDVRVPEGDADGTTTAGLSFEVVGDLTSPARFTFVVLDPRNYR HHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCEEEEEEECCCCCCEEEEEEECCCCCC APQSAAVRVPAGTTRGSVDVAYAADRRDDLYRNPIVLNVFGATGVMPGRFTPVLTVLDDD CCCCCEEEECCCCCCCCEEEEEECCCCCHHHCCCEEEEECCCCCCCCCCCCEEEEEECCC PAPTVTIRAARARIVEGALARWVVERSEPADYYTGIRARVVDDRSPDQLSVDDLPSGWLR CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCHHH HHVAVVPPAGTPLHEVDLRFFGLIEPGETADRFAIPVRRDGLDEGAETVILRIRVQKAGD CEEEEECCCCCCHHEECEEEEEEECCCCCCCCEECEEECCCCCCCCEEEEEEEEEECCCC PVVRTVTVGDG CEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA