Click here to switch to the map view.

The map label for this gene is ydhP [H]

Identifier: 119717782

GI number: 119717782

Start: 3775561

End: 3776796

Strand: Reverse

Name: ydhP [H]

Synonym: Noca_3560

Alternate gene names: 119717782

Gene position: 3776796-3775561 (Counterclockwise)

Preceding gene: 119717783

Following gene: 119717780

Centisome position: 75.75

GC content: 74.84

Gene sequence:

>1236_bases
ATGACGACGACCGCGCCCGCAGCGGGGCTGGCGCCGAGCAGCCGCGCCTCGCACTTCGCGCTCGCGGTGCTGGCCCTCGC
GCTCGGCGGCTTCGCGATCGGCACCACCGAGTTCGTGACGATGGGGCTGCTGCCGCAGATCGCGGACGGGATCGACGTCT
CGATCCCGACCGCCGGCCACGTGATCTCGGCGTACGCGCTCGGCGTCGTCGTCGGCGCCCCGCTGATCGCGGTGCTCGGC
GCCCGGCTCCCGCGGCGCGGGCTGCTGGTCGGGCTGATGGTCGCCTACGCCGCGTTCAACCTGCTCAGCGCGGTGGCGAC
CGGGTACGGCGTGCTCTTCGTCGCCCGGTTCCTCGACGGGATGCCGCACGGCGCCTACTTCGGGGTCGCCTCGCTGGTCG
CCGCGAGCCTCGCGCCGCCGGCCCGGCGTGGCCGCGCCGTGGCCTCGGTGATGCTCGGGCTCTCGGTCGCCAACGTGGTC
GGCGTCCCCGCCGCGACCTGGCTGGGCCAGCAGGCGGGCTGGCGCGCGGCGTACCTCTCGACGGCGCTCATCTCGGCCGC
GACGATCGTGATGGTCCTGCTCTTCGTGCCCTCGTGCCCCGGCAACCCCGCCGCGACCGGGCGTCGCGAGCTGCAGTTCT
TCCGCAACGGGCAGGCGATGCTGACCCTGCTGGCGGGTGCCGTCGGCTTCGGCGGGCTGTTCGCGGTCTACTCCTACATC
GCCCCCACCGTCACCGAGGTCGGCGGGCTCGCGGAGTCCGCCGTGCCGGTGTTCACCGCCGCCTTCGGCGTCGGCATGGT
CGCCGGCACCTGGCTGGCCGGCCGGCTGGCGGAGTGGTCGGTCCTCCGGTCGCTGATCTGGTCCGGCATCGGCTCCGGCC
TGGTCATGCTGGTCGTCTGGGCGGCCGCCCCGCACGGGTGGCTGCTGCTGCCGGCGGTGTTCCTGGTCACCGCGATCGGC
TCGGTCCTGGTGATCAACCTCCAGCTGCGGCTGATGGCGGTCTCCGGCGAGGCGCAGACGCTGGGCGCCGCGATGAACCA
CGCGTCGCTCAACCTCGCCAACGCCCTCGGCGCCTGGCTCGGCGGCCTCGTGATCGCCGCGGGCTACGGCTACCGCGCGC
CCGCGCTCGTCGGGGGCGCGCTCTCGGTGGTCGGGGTGGCCGTGCTGCTGTGGTCGGCCTCGGTCCACGGGCGCGAGGAG
CGCGCCTCGGCGTACTCCGAGGCCAGCAGCTCGTAG

Upstream 100 bases:

>100_bases
GGCGTACGAACAGCGCGCCCGGCGCGGCGCGGAATAGGCGCCACCGGTCGTCCGGTTGCAGACTGGCAGTGCCACGACGA
CCGGAAGGCCCCGCACGCCC

Downstream 100 bases:

>100_bases
CCGACCAGGTCGACCGGGGTGCCGTCGCCGGTGTGCACGGCCGCGCGCTGGACGCCGGAACGGCGCATTCCGTTGGCCTC
GAGCACCCGCAGCGAGGCGA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTTTAPAAGLAPSSRASHFALAVLALALGGFAIGTTEFVTMGLLPQIADGIDVSIPTAGHVISAYALGVVVGAPLIAVLG
ARLPRRGLLVGLMVAYAAFNLLSAVATGYGVLFVARFLDGMPHGAYFGVASLVAASLAPPARRGRAVASVMLGLSVANVV
GVPAATWLGQQAGWRAAYLSTALISAATIVMVLLFVPSCPGNPAATGRRELQFFRNGQAMLTLLAGAVGFGGLFAVYSYI
APTVTEVGGLAESAVPVFTAAFGVGMVAGTWLAGRLAEWSVLRSLIWSGIGSGLVMLVVWAAAPHGWLLLPAVFLVTAIG
SVLVINLQLRLMAVSGEAQTLGAAMNHASLNLANALGAWLGGLVIAAGYGYRAPALVGGALSVVGVAVLLWSASVHGREE
RASAYSEASSS

Sequences:

>Translated_411_residues
MTTTAPAAGLAPSSRASHFALAVLALALGGFAIGTTEFVTMGLLPQIADGIDVSIPTAGHVISAYALGVVVGAPLIAVLG
ARLPRRGLLVGLMVAYAAFNLLSAVATGYGVLFVARFLDGMPHGAYFGVASLVAASLAPPARRGRAVASVMLGLSVANVV
GVPAATWLGQQAGWRAAYLSTALISAATIVMVLLFVPSCPGNPAATGRRELQFFRNGQAMLTLLAGAVGFGGLFAVYSYI
APTVTEVGGLAESAVPVFTAAFGVGMVAGTWLAGRLAEWSVLRSLIWSGIGSGLVMLVVWAAAPHGWLLLPAVFLVTAIG
SVLVINLQLRLMAVSGEAQTLGAAMNHASLNLANALGAWLGGLVIAAGYGYRAPALVGGALSVVGVAVLLWSASVHGREE
RASAYSEASSS
>Mature_410_residues
TTTAPAAGLAPSSRASHFALAVLALALGGFAIGTTEFVTMGLLPQIADGIDVSIPTAGHVISAYALGVVVGAPLIAVLGA
RLPRRGLLVGLMVAYAAFNLLSAVATGYGVLFVARFLDGMPHGAYFGVASLVAASLAPPARRGRAVASVMLGLSVANVVG
VPAATWLGQQAGWRAAYLSTALISAATIVMVLLFVPSCPGNPAATGRRELQFFRNGQAMLTLLAGAVGFGGLFAVYSYIA
PTVTEVGGLAESAVPVFTAAFGVGMVAGTWLAGRLAEWSVLRSLIWSGIGSGLVMLVVWAAAPHGWLLLPAVFLVTAIGS
VLVINLQLRLMAVSGEAQTLGAAMNHASLNLANALGAWLGGLVIAAGYGYRAPALVGGALSVVGVAVLLWSASVHGREER
ASAYSEASSS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=390, Percent_Identity=40.7692307692308, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1786595, Length=383, Percent_Identity=33.420365535248, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1787808, Length=231, Percent_Identity=26.8398268398268, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693198, Length=395, Percent_Identity=22.2784810126582, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41488; Mature: 41357

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTAPAAGLAPSSRASHFALAVLALALGGFAIGTTEFVTMGLLPQIADGIDVSIPTAGH
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCEECCCCHH
VISAYALGVVVGAPLIAVLGARLPRRGLLVGLMVAYAAFNLLSAVATGYGVLFVARFLDG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MPHGAYFGVASLVAASLAPPARRGRAVASVMLGLSVANVVGVPAATWLGQQAGWRAAYLS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHH
TALISAATIVMVLLFVPSCPGNPAATGRRELQFFRNGQAMLTLLAGAVGFGGLFAVYSYI
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
APTVTEVGGLAESAVPVFTAAFGVGMVAGTWLAGRLAEWSVLRSLIWSGIGSGLVMLVVW
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
AAAPHGWLLLPAVFLVTAIGSVLVINLQLRLMAVSGEAQTLGAAMNHASLNLANALGAWL
HCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GGLVIAAGYGYRAPALVGGALSVVGVAVLLWSASVHGREERASAYSEASSS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTTAPAAGLAPSSRASHFALAVLALALGGFAIGTTEFVTMGLLPQIADGIDVSIPTAGH
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHCCCCEECCCCHH
VISAYALGVVVGAPLIAVLGARLPRRGLLVGLMVAYAAFNLLSAVATGYGVLFVARFLDG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MPHGAYFGVASLVAASLAPPARRGRAVASVMLGLSVANVVGVPAATWLGQQAGWRAAYLS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHH
TALISAATIVMVLLFVPSCPGNPAATGRRELQFFRNGQAMLTLLAGAVGFGGLFAVYSYI
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
APTVTEVGGLAESAVPVFTAAFGVGMVAGTWLAGRLAEWSVLRSLIWSGIGSGLVMLVVW
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
AAAPHGWLLLPAVFLVTAIGSVLVINLQLRLMAVSGEAQTLGAAMNHASLNLANALGAWL
HCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GGLVIAAGYGYRAPALVGGALSVVGVAVLLWSASVHGREERASAYSEASSS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]