| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is cobIJ [H]
Identifier: 119717631
GI number: 119717631
Start: 3610930
End: 3612510
Strand: Reverse
Name: cobIJ [H]
Synonym: Noca_3409
Alternate gene names: 119717631
Gene position: 3612510-3610930 (Counterclockwise)
Preceding gene: 119717632
Following gene: 119717630
Centisome position: 72.45
GC content: 71.16
Gene sequence:
>1581_bases GTGAGCACCACCCCACGTCGTCCTCGCTCCGCTCCGGGCGCCGCGGGGGCCCCGAAAGGCACCGGCCGTTTGACGGTCGT CGGCATCGGCCCCGGCGACCCGGAGCTCATGACGCTCAAGGCCGCTCGGATCATCGGCGCGGCTGACGTCGTTGCGTACC ACGCTGGGGTGAAGACGAAGTCCCACGCGCGTCGCATTGCCGGCGGCATCATTCCAGCCGAGGTGATCGAGGAGGAGTTG CGCTATCCGGTCACCACCGGCACCACCGACCATCCCGGTGGGTATGTCGGGGCGATGACCGACTTCTACGAGTCCTGCGC GGTACGGCTGTCGGCTCACCTCGACGCGGGGCGCGACGTGGTCCTGCTCTCGGAGGGCGATCCCCTCTTCTACGGCTCGT CGATGTATCTCCACGACCGGTTCAAGGAGATCTACCCGATTGAGGTGGTGCCGGGCGTGCCCGCCTTCGCGGCGGCGACG GCGGCGATCGCTGGCAGCTCGGGCCCGTTGGTTCGACAGACAGATGTCCTGACCGTCCTGCCCGGAACCTTGCCCGAGCC GGAGCTCGCGAGGCGGCTGGCGGACACAGAGGCCGCCGTCATCATGAAGCTCGGCCGGAACTTTCCAGCCGTGCGCTCCG CGCTGGCGCAGGCGGGGCGGCTCGAGGGCGCCTGGTACGTCGAGCGGGCGTCGCAGTCCGAGGAGCGGTGGCTGCCTGTA GCCGAGGTCGATCCGGACTCGGTGCCCTACTTCTCCCTGATCGTCGTCCCGGGTGACACGGCCGACCGGCAGACCGCTCA GCGGCTGCGCGCTCGCGAGGCGGAGCCCAGCGCATCGGTCGCGGCACCCGACGGGCGGACCGCTGAACTCCTGGTCGTCG GCCTCGGCCCCGACCACTGGCTCACGCCAGAAGCGTCGGCGGCTCTGGGCGAGGTCAATCACGTGGTCGGCTACGCCCCG TGCGTGGCTCGCGTCGCGCAGCGTGCCGGAATCACCCGCCACGCGTCAGGCAACACCGTCGAGGTCGACCGGGCTCGGGT CGCGCTCGACCTGGCCGGATCGGGGGAGCGGGTCGCGGTCGTCTCTGGCGGCGACGCCGGTGTGTTCGGGATGGCAGCGG CCGTCTTCGAGGCGGCTGAGGATCCGACGTACGCCGGCGTCCAGATTCGGGTGCTGCCGGGGGTCAGCGCCGTGCAGGCG GTGGCCGCCCGTGCCGGTGCGCCCATTGGGGCAGACTTCGCCGTTGTCTCGCTCTCCGACAGGCTCGAGCCGTGGGAGGT CGTGGAACGGCGCCTCCGCGCCATCGCCGACGCCGACCTCGTGCTGGCGATCGACAACCCGGCCCCCCGCTCCCGGACCG AGCAGATTGCCACCGCCCACCGTGTCCTGCTGGAGCATCGCAAGCCCGAGACCGTGGTCATCGTCGGGCGCGACGTCGGG CGCGACGAGGAGTCGCTGACCGTCACGACGCTGGCCGACCTGGACCCGGAGACGATCGACATGAAGTGCCTGCTGATCGT GGGTGCCGAGAGGACACGGGTGAGCCGCGCCGGCGTGTGGACGCCGAGGTACGTGCGGTGA
Upstream 100 bases:
>100_bases TGCCGGCCGATGCCGAGAAGCTCGCCGCCACCGTCCGTGGCCGCCGCGGGGGATCGGCGATGACCTCGTCAGCCCTCAAT GCACTCGCCCAGGAGGCAGA
Downstream 100 bases:
>100_bases GTGCTGCCGTCCACTTCGTCGGCGCCGGACCCGGCGCGGCCGACCTGCTGACCGTGCGCGCGACTCGCCTGCTGGCGCAG GCGGACCTGGTGCTCTATCC
Product: precorrin-3 methyltransferase / precorrin-2 C20-methyltransferase
Products: NA
Alternate protein names: Precorrin-2 C(20)-methyltransferase; S-adenosyl-L-methionine--precorrin-2 methyltransferase; SP2MT; Precorrin-3B C17-methyltransferase; S-adenosyl-L-methionine--precorrin-3B methyltransferase [H]
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MSTTPRRPRSAPGAAGAPKGTGRLTVVGIGPGDPELMTLKAARIIGAADVVAYHAGVKTKSHARRIAGGIIPAEVIEEEL RYPVTTGTTDHPGGYVGAMTDFYESCAVRLSAHLDAGRDVVLLSEGDPLFYGSSMYLHDRFKEIYPIEVVPGVPAFAAAT AAIAGSSGPLVRQTDVLTVLPGTLPEPELARRLADTEAAVIMKLGRNFPAVRSALAQAGRLEGAWYVERASQSEERWLPV AEVDPDSVPYFSLIVVPGDTADRQTAQRLRAREAEPSASVAAPDGRTAELLVVGLGPDHWLTPEASAALGEVNHVVGYAP CVARVAQRAGITRHASGNTVEVDRARVALDLAGSGERVAVVSGGDAGVFGMAAAVFEAAEDPTYAGVQIRVLPGVSAVQA VAARAGAPIGADFAVVSLSDRLEPWEVVERRLRAIADADLVLAIDNPAPRSRTEQIATAHRVLLEHRKPETVVIVGRDVG RDEESLTVTTLADLDPETIDMKCLLIVGAERTRVSRAGVWTPRYVR
Sequences:
>Translated_526_residues MSTTPRRPRSAPGAAGAPKGTGRLTVVGIGPGDPELMTLKAARIIGAADVVAYHAGVKTKSHARRIAGGIIPAEVIEEEL RYPVTTGTTDHPGGYVGAMTDFYESCAVRLSAHLDAGRDVVLLSEGDPLFYGSSMYLHDRFKEIYPIEVVPGVPAFAAAT AAIAGSSGPLVRQTDVLTVLPGTLPEPELARRLADTEAAVIMKLGRNFPAVRSALAQAGRLEGAWYVERASQSEERWLPV AEVDPDSVPYFSLIVVPGDTADRQTAQRLRAREAEPSASVAAPDGRTAELLVVGLGPDHWLTPEASAALGEVNHVVGYAP CVARVAQRAGITRHASGNTVEVDRARVALDLAGSGERVAVVSGGDAGVFGMAAAVFEAAEDPTYAGVQIRVLPGVSAVQA VAARAGAPIGADFAVVSLSDRLEPWEVVERRLRAIADADLVLAIDNPAPRSRTEQIATAHRVLLEHRKPETVVIVGRDVG RDEESLTVTTLADLDPETIDMKCLLIVGAERTRVSRAGVWTPRYVR >Mature_525_residues STTPRRPRSAPGAAGAPKGTGRLTVVGIGPGDPELMTLKAARIIGAADVVAYHAGVKTKSHARRIAGGIIPAEVIEEELR YPVTTGTTDHPGGYVGAMTDFYESCAVRLSAHLDAGRDVVLLSEGDPLFYGSSMYLHDRFKEIYPIEVVPGVPAFAAATA AIAGSSGPLVRQTDVLTVLPGTLPEPELARRLADTEAAVIMKLGRNFPAVRSALAQAGRLEGAWYVERASQSEERWLPVA EVDPDSVPYFSLIVVPGDTADRQTAQRLRAREAEPSASVAAPDGRTAELLVVGLGPDHWLTPEASAALGEVNHVVGYAPC VARVAQRAGITRHASGNTVEVDRARVALDLAGSGERVAVVSGGDAGVFGMAAAVFEAAEDPTYAGVQIRVLPGVSAVQAV AARAGAPIGADFAVVSLSDRLEPWEVVERRLRAIADADLVLAIDNPAPRSRTEQIATAHRVLLEHRKPETVVIVGRDVGR DEESLTVTTLADLDPETIDMKCLLIVGAERTRVSRAGVWTPRYVR
Specific function: Methylates precorrin-2 at the C-20 position to produce precorrin-3A [H]
COG id: COG2243
COG function: function code H; Precorrin-2 methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000878 - InterPro: IPR014777 - InterPro: IPR006364 - InterPro: IPR006363 - InterPro: IPR003043 [H]
Pfam domain/function: PF00590 TP_methylase [H]
EC number: =2.1.1.130; =2.1.1.131 [H]
Molecular weight: Translated: 55535; Mature: 55403
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00840 SUMT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTPRRPRSAPGAAGAPKGTGRLTVVGIGPGDPELMTLKAARIIGAADVVAYHAGVKTK CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCH SHARRIAGGIIPAEVIEEELRYPVTTGTTDHPGGYVGAMTDFYESCAVRLSAHLDAGRDV HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHEEECCCCCCE VLLSEGDPLFYGSSMYLHDRFKEIYPIEVVPGVPAFAAATAAIAGSSGPLVRQTDVLTVL EEEECCCCEEECCEEHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCEEECCEEEEC PGTLPEPELARRLADTEAAVIMKLGRNFPAVRSALAQAGRLEGAWYVERASQSEERWLPV CCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCE AEVDPDSVPYFSLIVVPGDTADRQTAQRLRAREAEPSASVAAPDGRTAELLVVGLGPDHW ECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEECCCCCC LTPEASAALGEVNHVVGYAPCVARVAQRAGITRHASGNTVEVDRARVALDLAGSGERVAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECEEEEEEECCCCCEEEE VSGGDAGVFGMAAAVFEAAEDPTYAGVQIRVLPGVSAVQAVAARAGAPIGADFAVVSLSD EECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECC RLEPWEVVERRLRAIADADLVLAIDNPAPRSRTEQIATAHRVLLEHRKPETVVIVGRDVG CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC RDEESLTVTTLADLDPETIDMKCLLIVGAERTRVSRAGVWTPRYVR CCCCCEEEEEEECCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCC >Mature Secondary Structure STTPRRPRSAPGAAGAPKGTGRLTVVGIGPGDPELMTLKAARIIGAADVVAYHAGVKTK CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCH SHARRIAGGIIPAEVIEEELRYPVTTGTTDHPGGYVGAMTDFYESCAVRLSAHLDAGRDV HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHEEECCCCCCE VLLSEGDPLFYGSSMYLHDRFKEIYPIEVVPGVPAFAAATAAIAGSSGPLVRQTDVLTVL EEEECCCCEEECCEEHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCEEECCEEEEC PGTLPEPELARRLADTEAAVIMKLGRNFPAVRSALAQAGRLEGAWYVERASQSEERWLPV CCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCE AEVDPDSVPYFSLIVVPGDTADRQTAQRLRAREAEPSASVAAPDGRTAELLVVGLGPDHW ECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEECCCCCC LTPEASAALGEVNHVVGYAPCVARVAQRAGITRHASGNTVEVDRARVALDLAGSGERVAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECEEEEEEECCCCCEEEE VSGGDAGVFGMAAAVFEAAEDPTYAGVQIRVLPGVSAVQAVAARAGAPIGADFAVVSLSD EECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECC RLEPWEVVERRLRAIADADLVLAIDNPAPRSRTEQIATAHRVLLEHRKPETVVIVGRDVG CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC RDEESLTVTTLADLDPETIDMKCLLIVGAERTRVSRAGVWTPRYVR CCCCCEEEEEEECCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]