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The map label for this gene is ybbD [H]

Identifier: 119717607

GI number: 119717607

Start: 3586037

End: 3587932

Strand: Reverse

Name: ybbD [H]

Synonym: Noca_3384

Alternate gene names: 119717607

Gene position: 3587932-3586037 (Counterclockwise)

Preceding gene: 119717608

Following gene: 119717601

Centisome position: 71.96

GC content: 74.21

Gene sequence:

>1896_bases
ATGCCAGCCCGGCCGAGCGCCGCCACCCGTCGCCGCAGGACCGCCGTCCGGACCCTCGGTGCGGGCTTGATCCTGCTGCT
CGCCGCAGCGTTCGGGCCGACCTTGTCGCCACCCCCGGCGACCGCCGCTGTCGGGGACCGAGCCGCCGCCGGCCCGTCGT
ACGACCGGGCGCGCACCGCGCTGGCGCAGCTGACGCGCAAGCAGAAGGTCGGGCAGCTGTTCGTGATCGAGGTCGCCGGT
CGTGACGCCAACGACGTGAGCGACGCGGCGAAGGCGGTCAACCAGAGGCTGTACGGCGTCGACACCCCGGCCCAGGCGAT
CGCGAAGTACCAGCCCGGCGGGGTCATCTACTTCACCACCCGCAACGGGGACGACAACATCGGTACGCCGGAGCAGGTGG
CCAGGCTGTCGAACGGGCTGCAGGCCGCGGCGCGGGCGCTGCCGGGCGGGATCCCGCTGCAGATCTCGGTCGACCAGGAG
GGCGGTGCCCTCGTGGCGCGCTTCGGCGCGGCGTCGGGAGCCACGCAGCTGCCGGGGAACATGGCGCTCGGTGCGGGCGC
GCTCGGGACCGGAGGGTCGGCGGCGGACGCCCGCCGCTCGGCGACCGTGATCGGCGCCGAGCTCGCGGCGGTCGGGGTGA
CGCAGGACTACGCGCCGGTCGCGGACGTGAACGTGAACCCGAACAACCCGGTGATCGGGATCAGGTCCATCGGCTCCGAC
CCGGCGCTGGTCTCCGACCTGGTCGCCGCCCAGGTCCGCGGCTTCCACCGCGGCGGAGTCTCCGCGGTCGCGAAGCACTT
CCCGGGACACGGGGACACGGGCGTGGACAGCCACTTCGGGCTGCCCGAGGTGACGCACACGCGGTCGCAGCTGGAGGAGA
TCGACCTGCCGCCGTTCCGTGCAGCGATCGCCGCCGGGGTCGACACGATCATGACCGCGCACGTCGTGCTGCCGGCGATC
GACCCGGGTGTCCCCGCGACGATGTCGCGGAAGATCCTCACCGGGCTGCTGCGCCGCGAGCTGGGCTTCGACGGGCTGAT
CGTGACCGACGCGCTGGACATGGGTGGCGCGACGGCGACGTACCCGCCCGACGTGGCGCCGGTGCGGGCGCTGCTCGCCG
GCGCCGACCAGCTGCTGATCCCGCCCGAGATGGACACGGCGTACCGCGCGGTGCTGAAGGCGGTGCGCAGCGGGCAGATC
AGCAGGGAGCGGCTCAACGAGTCGGTGTACCGGATCCTGCTGCACAAGTACGAGCGCGGGCTCTTCGGCGACCCGTACGT
CGACCGGGCCGCGGCGGCGGGGATCGTGGGCGCCCCGACGCACCTCGCGACCGCGCAGGCGATCACCGACCGCACGACGA
CGCTGCTCAAGAACGACGCCGGGCTGCTGCCGCTGACCGCCGGGCCGCGGCAGGTCCTGGTCGCCGGGTGGGGCGCGACG
ACGACGCAGACGCTCGCGACGGCGCTCGGCACCCGCGGCGCCACGACGCAGGTCCTCGAGTCCGGCACCACGCCCTCGGA
CGCGGCGATCGAGGACGCCGTCGCGGCGGCGCAGGACGCCGACCTGGTCGTCGTGACGACGAACAACGCGTACGCCGTCG
ACGCGTCGACCGGGGCACCGACCAACGCCGCGGCCGCGCAGACCCGGCTGGTGCGCGCCCTGCTCGAAACGGGTAGGCCG
GTCGTGGTCGCCGCCGTGCGCAACCCGTACGACGTCGCCTCGTTCCCCTCGGCGCCGACGGTGCTGGACACCTACGGCTA
CACCGCGGCCCAGGTCGAGTCGCTGGTCCGGGTGCTGTTCGGCGAGGTCGAGCCGACCGGCCGGCTGCCGGTCGCGATCC
CCGGCCCCAACGGCACCGGCGAGCTCTTCGAGCTCGGCCACGGTCTGGGCTACTGA

Upstream 100 bases:

>100_bases
GGTCGACCTGGTCTGACTTCGCGCCACGCCGGGCCGGACTGCTTGGTCGGCGCACCCGATTCGAGCCCGCGGCCCGCGTT
CTCGCGTTAGCGTCGCCCCC

Downstream 100 bases:

>100_bases
GGGTCCAGGACCGGCCGCGTCAGAGTACGCGGCGCGAGGCCGAGAGTGCGGACGTGCTCGGCGATCCGGCGCAGCGGCGC
GATCCAGACGTCGCCGTACT

Product: glycoside hydrolase family 3 protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 631; Mature: 630

Protein sequence:

>631_residues
MPARPSAATRRRRTAVRTLGAGLILLLAAAFGPTLSPPPATAAVGDRAAAGPSYDRARTALAQLTRKQKVGQLFVIEVAG
RDANDVSDAAKAVNQRLYGVDTPAQAIAKYQPGGVIYFTTRNGDDNIGTPEQVARLSNGLQAAARALPGGIPLQISVDQE
GGALVARFGAASGATQLPGNMALGAGALGTGGSAADARRSATVIGAELAAVGVTQDYAPVADVNVNPNNPVIGIRSIGSD
PALVSDLVAAQVRGFHRGGVSAVAKHFPGHGDTGVDSHFGLPEVTHTRSQLEEIDLPPFRAAIAAGVDTIMTAHVVLPAI
DPGVPATMSRKILTGLLRRELGFDGLIVTDALDMGGATATYPPDVAPVRALLAGADQLLIPPEMDTAYRAVLKAVRSGQI
SRERLNESVYRILLHKYERGLFGDPYVDRAAAAGIVGAPTHLATAQAITDRTTTLLKNDAGLLPLTAGPRQVLVAGWGAT
TTQTLATALGTRGATTQVLESGTTPSDAAIEDAVAAAQDADLVVVTTNNAYAVDASTGAPTNAAAAQTRLVRALLETGRP
VVVAAVRNPYDVASFPSAPTVLDTYGYTAAQVESLVRVLFGEVEPTGRLPVAIPGPNGTGELFELGHGLGY

Sequences:

>Translated_631_residues
MPARPSAATRRRRTAVRTLGAGLILLLAAAFGPTLSPPPATAAVGDRAAAGPSYDRARTALAQLTRKQKVGQLFVIEVAG
RDANDVSDAAKAVNQRLYGVDTPAQAIAKYQPGGVIYFTTRNGDDNIGTPEQVARLSNGLQAAARALPGGIPLQISVDQE
GGALVARFGAASGATQLPGNMALGAGALGTGGSAADARRSATVIGAELAAVGVTQDYAPVADVNVNPNNPVIGIRSIGSD
PALVSDLVAAQVRGFHRGGVSAVAKHFPGHGDTGVDSHFGLPEVTHTRSQLEEIDLPPFRAAIAAGVDTIMTAHVVLPAI
DPGVPATMSRKILTGLLRRELGFDGLIVTDALDMGGATATYPPDVAPVRALLAGADQLLIPPEMDTAYRAVLKAVRSGQI
SRERLNESVYRILLHKYERGLFGDPYVDRAAAAGIVGAPTHLATAQAITDRTTTLLKNDAGLLPLTAGPRQVLVAGWGAT
TTQTLATALGTRGATTQVLESGTTPSDAAIEDAVAAAQDADLVVVTTNNAYAVDASTGAPTNAAAAQTRLVRALLETGRP
VVVAAVRNPYDVASFPSAPTVLDTYGYTAAQVESLVRVLFGEVEPTGRLPVAIPGPNGTGELFELGHGLGY
>Mature_630_residues
PARPSAATRRRRTAVRTLGAGLILLLAAAFGPTLSPPPATAAVGDRAAAGPSYDRARTALAQLTRKQKVGQLFVIEVAGR
DANDVSDAAKAVNQRLYGVDTPAQAIAKYQPGGVIYFTTRNGDDNIGTPEQVARLSNGLQAAARALPGGIPLQISVDQEG
GALVARFGAASGATQLPGNMALGAGALGTGGSAADARRSATVIGAELAAVGVTQDYAPVADVNVNPNNPVIGIRSIGSDP
ALVSDLVAAQVRGFHRGGVSAVAKHFPGHGDTGVDSHFGLPEVTHTRSQLEEIDLPPFRAAIAAGVDTIMTAHVVLPAID
PGVPATMSRKILTGLLRRELGFDGLIVTDALDMGGATATYPPDVAPVRALLAGADQLLIPPEMDTAYRAVLKAVRSGQIS
RERLNESVYRILLHKYERGLFGDPYVDRAAAAGIVGAPTHLATAQAITDRTTTLLKNDAGLLPLTAGPRQVLVAGWGATT
TQTLATALGTRGATTQVLESGTTPSDAAIEDAVAAAQDADLVVVTTNNAYAVDASTGAPTNAAAAQTRLVRALLETGRPV
VVAAVRNPYDVASFPSAPTVLDTYGYTAAQVESLVRVLFGEVEPTGRLPVAIPGPNGTGELFELGHGLGY

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=270, Percent_Identity=34.4444444444444, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1788453, Length=620, Percent_Identity=24.1935483870968, Blast_Score=96, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 64678; Mature: 64547

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARPSAATRRRRTAVRTLGAGLILLLAAAFGPTLSPPPATAAVGDRAAAGPSYDRARTA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHH
LAQLTRKQKVGQLFVIEVAGRDANDVSDAAKAVNQRLYGVDTPAQAIAKYQPGGVIYFTT
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEE
RNGDDNIGTPEQVARLSNGLQAAARALPGGIPLQISVDQEGGALVARFGAASGATQLPGN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCC
MALGAGALGTGGSAADARRSATVIGAELAAVGVTQDYAPVADVNVNPNNPVIGIRSIGSD
CEECCCCCCCCCCCHHHHHHHHEEEHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCC
PALVSDLVAAQVRGFHRGGVSAVAKHFPGHGDTGVDSHFGLPEVTHTRSQLEEIDLPPFR
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
AAIAAGVDTIMTAHVVLPAIDPGVPATMSRKILTGLLRRELGFDGLIVTDALDMGGATAT
HHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
YPPDVAPVRALLAGADQLLIPPEMDTAYRAVLKAVRSGQISRERLNESVYRILLHKYERG
CCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
LFGDPYVDRAAAAGIVGAPTHLATAQAITDRTTTLLKNDAGLLPLTAGPRQVLVAGWGAT
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCC
TTQTLATALGTRGATTQVLESGTTPSDAAIEDAVAAAQDADLVVVTTNNAYAVDASTGAP
HHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC
TNAAAAQTRLVRALLETGRPVVVAAVRNPYDVASFPSAPTVLDTYGYTAAQVESLVRVLF
CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH
GEVEPTGRLPVAIPGPNGTGELFELGHGLGY
HCCCCCCCCEEEECCCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
PARPSAATRRRRTAVRTLGAGLILLLAAAFGPTLSPPPATAAVGDRAAAGPSYDRARTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHH
LAQLTRKQKVGQLFVIEVAGRDANDVSDAAKAVNQRLYGVDTPAQAIAKYQPGGVIYFTT
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEE
RNGDDNIGTPEQVARLSNGLQAAARALPGGIPLQISVDQEGGALVARFGAASGATQLPGN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCC
MALGAGALGTGGSAADARRSATVIGAELAAVGVTQDYAPVADVNVNPNNPVIGIRSIGSD
CEECCCCCCCCCCCHHHHHHHHEEEHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCC
PALVSDLVAAQVRGFHRGGVSAVAKHFPGHGDTGVDSHFGLPEVTHTRSQLEEIDLPPFR
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
AAIAAGVDTIMTAHVVLPAIDPGVPATMSRKILTGLLRRELGFDGLIVTDALDMGGATAT
HHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
YPPDVAPVRALLAGADQLLIPPEMDTAYRAVLKAVRSGQISRERLNESVYRILLHKYERG
CCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
LFGDPYVDRAAAAGIVGAPTHLATAQAITDRTTTLLKNDAGLLPLTAGPRQVLVAGWGAT
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCC
TTQTLATALGTRGATTQVLESGTTPSDAAIEDAVAAAQDADLVVVTTNNAYAVDASTGAP
HHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC
TNAAAAQTRLVRALLETGRPVVVAAVRNPYDVASFPSAPTVLDTYGYTAAQVESLVRVLF
CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH
GEVEPTGRLPVAIPGPNGTGELFELGHGLGY
HCCCCCCCCEEEECCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]