Click here to switch to the map view.

The map label for this gene is xylB [H]

Identifier: 119717537

GI number: 119717537

Start: 3520562

End: 3522073

Strand: Reverse

Name: xylB [H]

Synonym: Noca_3313

Alternate gene names: 119717537

Gene position: 3522073-3520562 (Counterclockwise)

Preceding gene: 119717538

Following gene: 119717536

Centisome position: 70.64

GC content: 71.43

Gene sequence:

>1512_bases
ATGACGTTCATCGGTATCGATATCGGCACCTTCGAGACCAAGGGTGTCCTCGTCGATGCGGACGGTGAGGTCCTTGCGCT
GGCCCGGCGGCGACACGGCATCTCAACACCGCGGCCCGGCCACGTCGAGCACCACCCGGAAACCGACTGGTGGGCGGATC
TCGCTGCGGTCGCGTCCGAGCTGATGAAGCACCCTCGGGCGCGGGATCTCCAGGCGGCCGCGGTGAGCGCCATCGGACCG
TGTGTGGTGGCAGTCGACGACGATCTGTCGCCCGTGCGTCCCGCGATCCTCTACGGGGTGGACACGCGCGCCACCGCGCA
GATCGAGGACCTGACGGACCGGCTCGGTGCCGCGGAGATCTTCCGGCGGTGCGGTAACCCGCTGACGAGCCAGTCGGCCG
GTCCGAAGATCGCGTGGATCAGGGACCAGGAGCCGCAGGCCTGGGCCCGCGCGCGTTGGTTCATGACCAGCCAGACCTGG
CTCGTCGCGAAGCTCACCGGCGCGGTGGTCATGGACCACGCCACCGCCGGCTACTTCCACCCTCTCTACGACCTCCGGGA
GGCGCAGTGGAACCTCGCGGGATGCGAGGACGTCGTCACCAGCGATCGGCTCCCACGGCTGGAGTGGACGACGACGATCG
CCGGGACCGTGCACGAGCGAGCGTCCGCGGAGACGGGACTACCGGTGGGGACACCCGTCATCGTCGGGACGACCGACGCG
CCGGCCGAGGCAGTCGCCGCGGGGGTCGTCTCCGAGGGGTCCCTCATGGCCATGTACGGGTCGAGCGGGTACTTCATCCG
CGTCGGCTCGAGCCCGATCACCCACCCGGACCTGTGGTCGGCGCCGTACGTGTTCCAGGACAGGTACGTGCTCGCGGCAG
GCACGGCGGCGACGGGCACGGCGACACGCTGGATCTCCGACGTGCTCGGCATCACCGACGACGAGGACTCCGTGACGTTC
GGTCGCCTGCTCGAGCTCGCCGAGGGCTCGCCGCCCGGAGCTCGTGGCGTCCTCGCGCTGCCCCACCTCTCCGGCGAGCG
CACTCCCTTCCAGGACCCGGACAGTCGCGCTGCGGTGGTCGGCCTGGGACTGGAGCACACCCGCTCGGACATCGCCCGCG
CGGTGCTCGAGGGCGCCGGGCACGCCGTCGCGGAGGCGATCCTCACCTACCTCCGGGCGGGGGTCCCCATCGACCGAGTC
GTGGCGATCGGCGGTGCGACGAAGAACCGCATCATCACCGGCACGGTCTCGACGGTCACCGGCCTGAGGCAGCAGATCGC
CGACTCGCCCGGAGCGGCGTACGGCGACGCGTTCCTCGCGGCGCTCGCCGTCGGTGGGGTCCCCGACCTGTCCGCCGGCG
CCGGGTGGTGGTCGTCGACGGGCACGGTCGAGCCCGACGCTGGCCACGCGGCGCAGCTCCGCTCCGACCACGAGGCGTTC
GTCGCGCTGTACCGGACGCTGGCGCCTTGGAACACGTCCCGACGGAATCGGGTCGAGGAGGTGGCGGGATGA

Upstream 100 bases:

>100_bases
CCATCGTGGGTACCTGGTTCAAGCGCGAGGGGAAGTTCACGAACGACGTCGACGCCGCGCGCGTCGCGGAGCTCATGGGG
GTCGTCAGGGAGCTGCGCTG

Downstream 100 bases:

>100_bases
GCACGGTGGACTGGGCCAAGATCGGCCGGCTGGTGGCCGACGGCGTATCGCTGTCGAGGGGCGACCGGGTGTCGGTGTTC
GTCACCGGCTCATCGGTGAT

Product: carbohydrate kinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MTFIGIDIGTFETKGVLVDADGEVLALARRRHGISTPRPGHVEHHPETDWWADLAAVASELMKHPRARDLQAAAVSAIGP
CVVAVDDDLSPVRPAILYGVDTRATAQIEDLTDRLGAAEIFRRCGNPLTSQSAGPKIAWIRDQEPQAWARARWFMTSQTW
LVAKLTGAVVMDHATAGYFHPLYDLREAQWNLAGCEDVVTSDRLPRLEWTTTIAGTVHERASAETGLPVGTPVIVGTTDA
PAEAVAAGVVSEGSLMAMYGSSGYFIRVGSSPITHPDLWSAPYVFQDRYVLAAGTAATGTATRWISDVLGITDDEDSVTF
GRLLELAEGSPPGARGVLALPHLSGERTPFQDPDSRAAVVGLGLEHTRSDIARAVLEGAGHAVAEAILTYLRAGVPIDRV
VAIGGATKNRIITGTVSTVTGLRQQIADSPGAAYGDAFLAALAVGGVPDLSAGAGWWSSTGTVEPDAGHAAQLRSDHEAF
VALYRTLAPWNTSRRNRVEEVAG

Sequences:

>Translated_503_residues
MTFIGIDIGTFETKGVLVDADGEVLALARRRHGISTPRPGHVEHHPETDWWADLAAVASELMKHPRARDLQAAAVSAIGP
CVVAVDDDLSPVRPAILYGVDTRATAQIEDLTDRLGAAEIFRRCGNPLTSQSAGPKIAWIRDQEPQAWARARWFMTSQTW
LVAKLTGAVVMDHATAGYFHPLYDLREAQWNLAGCEDVVTSDRLPRLEWTTTIAGTVHERASAETGLPVGTPVIVGTTDA
PAEAVAAGVVSEGSLMAMYGSSGYFIRVGSSPITHPDLWSAPYVFQDRYVLAAGTAATGTATRWISDVLGITDDEDSVTF
GRLLELAEGSPPGARGVLALPHLSGERTPFQDPDSRAAVVGLGLEHTRSDIARAVLEGAGHAVAEAILTYLRAGVPIDRV
VAIGGATKNRIITGTVSTVTGLRQQIADSPGAAYGDAFLAALAVGGVPDLSAGAGWWSSTGTVEPDAGHAAQLRSDHEAF
VALYRTLAPWNTSRRNRVEEVAG
>Mature_502_residues
TFIGIDIGTFETKGVLVDADGEVLALARRRHGISTPRPGHVEHHPETDWWADLAAVASELMKHPRARDLQAAAVSAIGPC
VVAVDDDLSPVRPAILYGVDTRATAQIEDLTDRLGAAEIFRRCGNPLTSQSAGPKIAWIRDQEPQAWARARWFMTSQTWL
VAKLTGAVVMDHATAGYFHPLYDLREAQWNLAGCEDVVTSDRLPRLEWTTTIAGTVHERASAETGLPVGTPVIVGTTDAP
AEAVAAGVVSEGSLMAMYGSSGYFIRVGSSPITHPDLWSAPYVFQDRYVLAAGTAATGTATRWISDVLGITDDEDSVTFG
RLLELAEGSPPGARGVLALPHLSGERTPFQDPDSRAAVVGLGLEHTRSDIARAVLEGAGHAVAEAILTYLRAGVPIDRVV
AIGGATKNRIITGTVSTVTGLRQQIADSPGAAYGDAFLAALAVGGVPDLSAGAGWWSSTGTVEPDAGHAAQLRSDHEAFV
ALYRTLAPWNTSRRNRVEEVAG

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Homo sapiens, GI42794763, Length=434, Percent_Identity=23.0414746543779, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI189409120, Length=434, Percent_Identity=23.0414746543779, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI4504007, Length=434, Percent_Identity=23.0414746543779, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1789987, Length=494, Percent_Identity=25.9109311740891, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790361, Length=471, Percent_Identity=24.6284501061571, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787789, Length=488, Percent_Identity=25, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1790005, Length=459, Percent_Identity=22.0043572984749, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17535599, Length=441, Percent_Identity=22.2222222222222, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24654573, Length=380, Percent_Identity=25.2631578947368, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17864214, Length=380, Percent_Identity=25.2631578947368, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 53282; Mature: 53151

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFIGIDIGTFETKGVLVDADGEVLALARRRHGISTPRPGHVEHHPETDWWADLAAVASE
CEEEEEEECCEECCCEEEECCCCEEHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LMKHPRARDLQAAAVSAIGPCVVAVDDDLSPVRPAILYGVDTRATAQIEDLTDRLGAAEI
HHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHH
FRRCGNPLTSQSAGPKIAWIRDQEPQAWARARWFMTSQTWLVAKLTGAVVMDHATAGYFH
HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHEEECCCCEEEEEHHCHHEEECCCCCCHH
PLYDLREAQWNLAGCEDVVTSDRLPRLEWTTTIAGTVHERASAETGLPVGTPVIVGTTDA
HHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCC
PAEAVAAGVVSEGSLMAMYGSSGYFIRVGSSPITHPDLWSAPYVFQDRYVLAAGTAATGT
CHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCH
ATRWISDVLGITDDEDSVTFGRLLELAEGSPPGARGVLALPHLSGERTPFQDPDSRAAVV
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEE
GLGLEHTRSDIARAVLEGAGHAVAEAILTYLRAGVPIDRVVAIGGATKNRIITGTVSTVT
ECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEHHHHHH
GLRQQIADSPGAAYGDAFLAALAVGGVPDLSAGAGWWSSTGTVEPDAGHAAQLRSDHEAF
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHH
VALYRTLAPWNTSRRNRVEEVAG
HHHHHHHCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TFIGIDIGTFETKGVLVDADGEVLALARRRHGISTPRPGHVEHHPETDWWADLAAVASE
EEEEEEECCEECCCEEEECCCCEEHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LMKHPRARDLQAAAVSAIGPCVVAVDDDLSPVRPAILYGVDTRATAQIEDLTDRLGAAEI
HHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHH
FRRCGNPLTSQSAGPKIAWIRDQEPQAWARARWFMTSQTWLVAKLTGAVVMDHATAGYFH
HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHEEECCCCEEEEEHHCHHEEECCCCCCHH
PLYDLREAQWNLAGCEDVVTSDRLPRLEWTTTIAGTVHERASAETGLPVGTPVIVGTTDA
HHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCC
PAEAVAAGVVSEGSLMAMYGSSGYFIRVGSSPITHPDLWSAPYVFQDRYVLAAGTAATGT
CHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCH
ATRWISDVLGITDDEDSVTFGRLLELAEGSPPGARGVLALPHLSGERTPFQDPDSRAAVV
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEE
GLGLEHTRSDIARAVLEGAGHAVAEAILTYLRAGVPIDRVVAIGGATKNRIITGTVSTVT
ECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEHHHHHH
GLRQQIADSPGAAYGDAFLAALAVGGVPDLSAGAGWWSSTGTVEPDAGHAAQLRSDHEAF
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHH
VALYRTLAPWNTSRRNRVEEVAG
HHHHHHHCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1660563 [H]