| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717502
Identifier: 119717502
GI number: 119717502
Start: 3484532
End: 3485779
Strand: Reverse
Name: 119717502
Synonym: Noca_3278
Alternate gene names: NA
Gene position: 3485779-3484532 (Counterclockwise)
Preceding gene: 119717503
Following gene: 119717501
Centisome position: 69.91
GC content: 72.28
Gene sequence:
>1248_bases GTGACCAGCCTGGCCGAGATCGTCGCACCCCGCCGGCTCGGCACCGGGTTCCGGTGGCTGCTCGCGTCGTCCTGGGTGAG CAACCTCGGCGACGGACTGGCCCTCGCCGCCGGGCCCCTGCTGGTGGCGTCCCAGACCCACGACCCGTTCCTCGTCGCGC TCGCGGCGCTGCTCCAGTGGCTGCCGCCGCTGCTGTTCGGGCTGTACGCCGGGGCGCTCGCCGACCGCCTCGACCGCCGG CTGATCGTGGTGACGGTCGACCTGTTGCGCGCCGTCGTCCTGGTGCTCCTCACGCTCGCGATCGCGACCGACCTGGTCAC GATCACGCTGGTGCTCGTCACGATGTTCCTGCTCGGCACCGCGGAGGTGTTCGCCGACAACACCGCGTCGACGCTGCTGC CGATGCTGGTGCACCGCGACGACCTCGGCGTCGCCAATGCCCGGCTGACCACCGGCTTCATCACCGTCAACCAGCTCGCC GGCCCGCCGATCGGCGCGGCCCTGTTCGCCGCCGGGCACGCCGTGCCGTTCGTCGCGCAGGCGGTGGTGGTGGCGCTCGG CGCGCTGCTCGCCGCGCAGATCGCGCTGCCGCCGCACGGGCGGTCCCGCGACGAGCGGCCGCAGCTGCGCCAGGACGTGG TCGAGGCGTTCCGCTGGGTGCTGCACAACGCCGCCGTACGCACCCTGGTGCTGACGATCTTCGTCTTCAACATCACCTTC GGCGCGGCCTGGTCGATCCTGGTCCTCTACGCCACCCAGCGGCTCGGGATGGGGGAAGTCGGCTTCGGGCTGCTGACCAC GGTGTCAGCGATCGGCGGCCTGATCGGAACCCTCGCCTACGGCTGGATCACCCGCCGGGTCAGCCTCGCCAACATCATGC GAGCGGGCCTGGTCTTCGAGACCTTCACCCACCTGGCGCTCGCCCTCACGACGCGGCCGGCGGTGGCGATGGCGATCTTC TTCGTCTTCGGCGCCCACGCCTTCATCTGGGGCACGACGTCGACCACCGTCCGGCAGCGCGCCGTGCCCGGCGAGCTGCA GGGCCGGGTCGGCAGCGTCAACCTGGTCGGCGTGTTCGGCGGCCTGGTCATCGGCTCCGGCATCGGTGGTGGTCTCGCCC AGCACTGGGGCGTGACCGCGCCGTTCTGGTTCGCGTTCGCCGGCTCCGCGGTCTTCGTCGTGCTGATCTGGGGCCAGCTG GTCCACATCGCGCACGCCGACGAGCAGGGGCAGCCGGCGGGGGCCTGA
Upstream 100 bases:
>100_bases GGCCGGCCTGCTCGGGCTGGCGCTGGCCCTGGCGCTCGCCGTACGCCGACGCGCAAATCGGATGCCCGGGGCGACCCTCG GAGGCTAGTGTCTGGCCCTT
Downstream 100 bases:
>100_bases GGTGGTTGCATGAACCCATGCACGCGTTGACCGACCTGCTCGAGGCGCTCCCGGCCGGCGTCGTCGTGACCGACGGCGAC GCCATGGAGAAGTACCGCTT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Antibiotic Transporter; Facilitator Superfamily Transporter; Integral Membrane Efflux Protein; Inner Membrane Protein; MFS Transporter; Antibiotic Efflux Protein; Facilitator Family Transporter; MFS Superfamily Transporter
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MTSLAEIVAPRRLGTGFRWLLASSWVSNLGDGLALAAGPLLVASQTHDPFLVALAALLQWLPPLLFGLYAGALADRLDRR LIVVTVDLLRAVVLVLLTLAIATDLVTITLVLVTMFLLGTAEVFADNTASTLLPMLVHRDDLGVANARLTTGFITVNQLA GPPIGAALFAAGHAVPFVAQAVVVALGALLAAQIALPPHGRSRDERPQLRQDVVEAFRWVLHNAAVRTLVLTIFVFNITF GAAWSILVLYATQRLGMGEVGFGLLTTVSAIGGLIGTLAYGWITRRVSLANIMRAGLVFETFTHLALALTTRPAVAMAIF FVFGAHAFIWGTTSTTVRQRAVPGELQGRVGSVNLVGVFGGLVIGSGIGGGLAQHWGVTAPFWFAFAGSAVFVVLIWGQL VHIAHADEQGQPAGA
Sequences:
>Translated_415_residues MTSLAEIVAPRRLGTGFRWLLASSWVSNLGDGLALAAGPLLVASQTHDPFLVALAALLQWLPPLLFGLYAGALADRLDRR LIVVTVDLLRAVVLVLLTLAIATDLVTITLVLVTMFLLGTAEVFADNTASTLLPMLVHRDDLGVANARLTTGFITVNQLA GPPIGAALFAAGHAVPFVAQAVVVALGALLAAQIALPPHGRSRDERPQLRQDVVEAFRWVLHNAAVRTLVLTIFVFNITF GAAWSILVLYATQRLGMGEVGFGLLTTVSAIGGLIGTLAYGWITRRVSLANIMRAGLVFETFTHLALALTTRPAVAMAIF FVFGAHAFIWGTTSTTVRQRAVPGELQGRVGSVNLVGVFGGLVIGSGIGGGLAQHWGVTAPFWFAFAGSAVFVVLIWGQL VHIAHADEQGQPAGA >Mature_414_residues TSLAEIVAPRRLGTGFRWLLASSWVSNLGDGLALAAGPLLVASQTHDPFLVALAALLQWLPPLLFGLYAGALADRLDRRL IVVTVDLLRAVVLVLLTLAIATDLVTITLVLVTMFLLGTAEVFADNTASTLLPMLVHRDDLGVANARLTTGFITVNQLAG PPIGAALFAAGHAVPFVAQAVVVALGALLAAQIALPPHGRSRDERPQLRQDVVEAFRWVLHNAAVRTLVLTIFVFNITFG AAWSILVLYATQRLGMGEVGFGLLTTVSAIGGLIGTLAYGWITRRVSLANIMRAGLVFETFTHLALALTTRPAVAMAIFF VFGAHAFIWGTTSTTVRQRAVPGELQGRVGSVNLVGVFGGLVIGSGIGGGLAQHWGVTAPFWFAFAGSAVFVVLIWGQLV HIAHADEQGQPAGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43736; Mature: 43605
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLAEIVAPRRLGTGFRWLLASSWVSNLGDGLALAAGPLLVASQTHDPFLVALAALLQW CCCHHHHHCCHHCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHH LPPLLFGLYAGALADRLDRRLIVVTVDLLRAVVLVLLTLAIATDLVTITLVLVTMFLLGT HHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVFADNTASTLLPMLVHRDDLGVANARLTTGFITVNQLAGPPIGAALFAAGHAVPFVAQ HHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEHEEEEHHHCCCCHHHHHHHHCCHHHHHHH AVVVALGALLAAQIALPPHGRSRDERPQLRQDVVEAFRWVLHNAAVRTLVLTIFVFNITF HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAAWSILVLYATQRLGMGEVGFGLLTTVSAIGGLIGTLAYGWITRRVSLANIMRAGLVFE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFTHLALALTTRPAVAMAIFFVFGAHAFIWGTTSTTVRQRAVPGELQGRVGSVNLVGVFG HHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCCHHCCCCCCEEHHHHHH GLVIGSGIGGGLAQHWGVTAPFWFAFAGSAVFVVLIWGQLVHIAHADEQGQPAGA HHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TSLAEIVAPRRLGTGFRWLLASSWVSNLGDGLALAAGPLLVASQTHDPFLVALAALLQW CCHHHHHCCHHCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCHHHHHHHHHHHH LPPLLFGLYAGALADRLDRRLIVVTVDLLRAVVLVLLTLAIATDLVTITLVLVTMFLLGT HHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVFADNTASTLLPMLVHRDDLGVANARLTTGFITVNQLAGPPIGAALFAAGHAVPFVAQ HHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEHEEEEHHHCCCCHHHHHHHHCCHHHHHHH AVVVALGALLAAQIALPPHGRSRDERPQLRQDVVEAFRWVLHNAAVRTLVLTIFVFNITF HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAAWSILVLYATQRLGMGEVGFGLLTTVSAIGGLIGTLAYGWITRRVSLANIMRAGLVFE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFTHLALALTTRPAVAMAIFFVFGAHAFIWGTTSTTVRQRAVPGELQGRVGSVNLVGVFG HHHHHHHHHHCCHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCCHHCCCCCCEEHHHHHH GLVIGSGIGGGLAQHWGVTAPFWFAFAGSAVFVVLIWGQLVHIAHADEQGQPAGA HHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA