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The map label for this gene is ydcM [C]

Identifier: 119717499

GI number: 119717499

Start: 3480471

End: 3481688

Strand: Reverse

Name: ydcM [C]

Synonym: Noca_3275

Alternate gene names: 119717499

Gene position: 3481688-3480471 (Counterclockwise)

Preceding gene: 119717501

Following gene: 119717498

Centisome position: 69.83

GC content: 69.46

Gene sequence:

>1218_bases
ATGGCGTTCAACCACCAGATCGCCCGGGTGAAGGCCAACCTGGACCAGCGCGCTGCGGAGAGGTCGTACGGCGTCGCGGA
CGCGGGCCTGACCCCGGGGCAGTCGTGGTCGAAGGTTTCCCTCATCAACCACATGAACCGGTGGAAGGACGGTCGCGACC
CGTCCGCGCACGTCAACGACGACGGCACCCGCGGGCTGACCTGGCGCGGTGAGGTCTCGGCCGACGTGTTCGAGACCGCC
AGCGTGAACGCTGCGCAGGCGTTGCAGAACTGGACCGACTCGAAGAAGGGCACCCGTGCGGGCAAGGCGGCCGGGTTCCC
GCGGTTCAAGTCCCGGCACAAGACCACCCCGGCGTTCCGGCTCCGCTCCAAGTACACCGAGGGCGAGGCTCCGCCGGTGC
GGCCGACCGGACCGCGCACGATGCGGTTCCCCAAGCTCGGCGAGCTCCGGGTCCACGAGCACACCGGCCGTCTCGCGAAG
ATGCTCGACCGCGGCCGGTTCCACGCGTACGCGGCGTCGTTCCGCTACGAGCGCGGGCGCTGGGTCGTCTCCATCACCGG
CGTCGCAGCCGAGTTCCACCACCAGTGCCGCACCGCCCCCGACCGACACCCGGCCCGGGTCGGTGTTGACCTCGGCGTGA
AGACACTCGCGGTCGTCGCCGACGAGCACGGACGCCAGCTGCAGGCGCACGAGGGGGTGAAAGCGCTGCAGCACGCCCAG
GCACGCCTCAGGCTCGCCGACCAGGCCTACTCGAGAACCAAGAAGGGATCTGGTGGCCGAGCGAAGGCAGCACGACGCCT
GGGCAAGATGCACGGACGTGTCGCCGCCATCCGCAAATACCTGCTGCACCGGATCACCACGGAGCTCGCACGGGCGTACG
TCAGCGTGACGATCGAGGACCTGAACGCAGCAGGGATGCTCCAGATCCGGTCGTTGGCGCGGCATGTCTCGGACGCGGCG
TTCGGAGAGTTCCGCAGGCAAGTCGCCTACAAGACGGCCTGGTACGGCACCGAGCTGATCGTCGCGGACCGGTGGTTCCC
GTCCTCGAAGACGTGCTCCGGCTGCGGCAACATCGACCCCGACCTGACACTGTCGGACCGCACGTACGGGTGCTCCGGCT
GCGGCCTGGTCATCGACCGCGACCTGAACGCCGCCATCAACCTCGCCCGCTACGGGCAGGACACCCAGACTTCTCCGCCG
CTACCCGCGGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCCGGGGTTCCGTTGACGCGCGCGATGACAGTGCGGTTCACCCTCGACCCAACCCGGGACCAGCACCAGCAACTCCTCG
CGCACGCTGGGGCTTCCAGG

Downstream 100 bases:

>100_bases
CAGAGCAGCTTCTGTCCGCGCCTGGATGAGCCGGGCCGTAGAGCCGACCGCCACCCCGCACCACGAAGGGGCCCTGGGTC
GGAACCAGCATCAGACCAGC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MAFNHQIARVKANLDQRAAERSYGVADAGLTPGQSWSKVSLINHMNRWKDGRDPSAHVNDDGTRGLTWRGEVSADVFETA
SVNAAQALQNWTDSKKGTRAGKAAGFPRFKSRHKTTPAFRLRSKYTEGEAPPVRPTGPRTMRFPKLGELRVHEHTGRLAK
MLDRGRFHAYAASFRYERGRWVVSITGVAAEFHHQCRTAPDRHPARVGVDLGVKTLAVVADEHGRQLQAHEGVKALQHAQ
ARLRLADQAYSRTKKGSGGRAKAARRLGKMHGRVAAIRKYLLHRITTELARAYVSVTIEDLNAAGMLQIRSLARHVSDAA
FGEFRRQVAYKTAWYGTELIVADRWFPSSKTCSGCGNIDPDLTLSDRTYGCSGCGLVIDRDLNAAINLARYGQDTQTSPP
LPAAA

Sequences:

>Translated_405_residues
MAFNHQIARVKANLDQRAAERSYGVADAGLTPGQSWSKVSLINHMNRWKDGRDPSAHVNDDGTRGLTWRGEVSADVFETA
SVNAAQALQNWTDSKKGTRAGKAAGFPRFKSRHKTTPAFRLRSKYTEGEAPPVRPTGPRTMRFPKLGELRVHEHTGRLAK
MLDRGRFHAYAASFRYERGRWVVSITGVAAEFHHQCRTAPDRHPARVGVDLGVKTLAVVADEHGRQLQAHEGVKALQHAQ
ARLRLADQAYSRTKKGSGGRAKAARRLGKMHGRVAAIRKYLLHRITTELARAYVSVTIEDLNAAGMLQIRSLARHVSDAA
FGEFRRQVAYKTAWYGTELIVADRWFPSSKTCSGCGNIDPDLTLSDRTYGCSGCGLVIDRDLNAAINLARYGQDTQTSPP
LPAAA
>Mature_404_residues
AFNHQIARVKANLDQRAAERSYGVADAGLTPGQSWSKVSLINHMNRWKDGRDPSAHVNDDGTRGLTWRGEVSADVFETAS
VNAAQALQNWTDSKKGTRAGKAAGFPRFKSRHKTTPAFRLRSKYTEGEAPPVRPTGPRTMRFPKLGELRVHEHTGRLAKM
LDRGRFHAYAASFRYERGRWVVSITGVAAEFHHQCRTAPDRHPARVGVDLGVKTLAVVADEHGRQLQAHEGVKALQHAQA
RLRLADQAYSRTKKGSGGRAKAARRLGKMHGRVAAIRKYLLHRITTELARAYVSVTIEDLNAAGMLQIRSLARHVSDAAF
GEFRRQVAYKTAWYGTELIVADRWFPSSKTCSGCGNIDPDLTLSDRTYGCSGCGLVIDRDLNAAINLARYGQDTQTSPPL
PAAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=305, Percent_Identity=27.5409836065574, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44671; Mature: 44540

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFNHQIARVKANLDQRAAERSYGVADAGLTPGQSWSKVSLINHMNRWKDGRDPSAHVND
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DGTRGLTWRGEVSADVFETASVNAAQALQNWTDSKKGTRAGKAAGFPRFKSRHKTTPAFR
CCCCCCEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHH
LRSKYTEGEAPPVRPTGPRTMRFPKLGELRVHEHTGRLAKMLDRGRFHAYAASFRYERGR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHEECCCC
WVVSITGVAAEFHHQCRTAPDRHPARVGVDLGVKTLAVVADEHGRQLQAHEGVKALQHAQ
EEEEEECHHHHHHHHHCCCCCCCCCEEECCCCHHHHEEEECCCCCCCHHHHHHHHHHHHH
ARLRLADQAYSRTKKGSGGRAKAARRLGKMHGRVAAIRKYLLHRITTELARAYVSVTIED
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
LNAAGMLQIRSLARHVSDAAFGEFRRQVAYKTAWYGTELIVADRWFPSSKTCSGCGNIDP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
DLTLSDRTYGCSGCGLVIDRDLNAAINLARYGQDTQTSPPLPAAA
CCEECCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFNHQIARVKANLDQRAAERSYGVADAGLTPGQSWSKVSLINHMNRWKDGRDPSAHVND
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DGTRGLTWRGEVSADVFETASVNAAQALQNWTDSKKGTRAGKAAGFPRFKSRHKTTPAFR
CCCCCCEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHH
LRSKYTEGEAPPVRPTGPRTMRFPKLGELRVHEHTGRLAKMLDRGRFHAYAASFRYERGR
HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHEECCCC
WVVSITGVAAEFHHQCRTAPDRHPARVGVDLGVKTLAVVADEHGRQLQAHEGVKALQHAQ
EEEEEECHHHHHHHHHCCCCCCCCCEEECCCCHHHHEEEECCCCCCCHHHHHHHHHHHHH
ARLRLADQAYSRTKKGSGGRAKAARRLGKMHGRVAAIRKYLLHRITTELARAYVSVTIED
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
LNAAGMLQIRSLARHVSDAAFGEFRRQVAYKTAWYGTELIVADRWFPSSKTCSGCGNIDP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
DLTLSDRTYGCSGCGLVIDRDLNAAINLARYGQDTQTSPPLPAAA
CCEECCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]