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The map label for this gene is rimM

Identifier: 119717481

GI number: 119717481

Start: 3458283

End: 3458837

Strand: Reverse

Name: rimM

Synonym: Noca_3257

Alternate gene names: 119717481

Gene position: 3458837-3458283 (Counterclockwise)

Preceding gene: 119717482

Following gene: 119717480

Centisome position: 69.37

GC content: 75.86

Gene sequence:

>555_bases
GTGGAGACCATCGAGGTCCTGGTGGGACGGATCGGCAAGCCGCACGGCATCCGGGGGGAGCTCACCCTCGACGTGCGCAC
GGACGAGCCCGAACGGCGGTTCGCGCCCGGCGCGGTCCTGCGCGCCGAGCCGCCGGCGGGGTCCGCCTCCCGGCTGCGCA
GGGTCACCGTGCGGTCCGCCCGCTGGCACCAGTCGACGCTGCTGGTCGCCTTCGAGGAGGTCGCCGACCGCACCGCCGCG
GAGGCGGCGCGCGGCATCCTCCTGCACGCGACCGTCCCCGCGGACGCCGCCCCGGACGACCCCGACGAGTACTACGACCA
CCAGCTGGTCGGCCTCGCGGCGTACGACGTCTCCGGCGCCGCGCTCGGCTCGGTCACCGGACTGGTCCACGGCGGCGCCC
AGGACCTGCTCACCGTGCGCACCCCCGATGGCCGCGACGCGCTCGTGCCGTTCGTCAAGGCACTGGTCCCCGAGGTCGAC
CTCGCCGGCCGTCGCGTGGTCATCGCGGACCGTCCCGGCCTGGTCACGCCGCTGCCCGAGGACGACGAGCACTAG

Upstream 100 bases:

>100_bases
CCCGACGACCTGGTCCGTGGCGCCCCCCTCGAGGTCGAGGGGCTGCCCGGGTTCCGACGCCTGGTCGGGCTGGAGGGGGC
CTACCCCCTACCCTGACCGC

Downstream 100 bases:

>100_bases
TGCGCATCGACATCGTCTCGATCTTCCCCGAGTACCTCGCGCCCCTGGAGCTCTCGCTGGCCGGGAAGGCGCGCGAGAAG
GGCCTGATCGACGTCCGGGT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
METIEVLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSARWHQSTLLVAFEEVADRTAA
EAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGAALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVD
LAGRRVVIADRPGLVTPLPEDDEH

Sequences:

>Translated_184_residues
METIEVLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSARWHQSTLLVAFEEVADRTAA
EAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGAALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVD
LAGRRVVIADRPGLVTPLPEDDEH
>Mature_184_residues
METIEVLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSARWHQSTLLVAFEEVADRTAA
EAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGAALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVD
LAGRRVVIADRPGLVTPLPEDDEH

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NOCSJ (A1SLS4)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_924446.1
- ProteinModelPortal:   A1SLS4
- SMR:   A1SLS4
- STRING:   A1SLS4
- GeneID:   4599119
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_3257
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- BioCyc:   NSP35761:NOCA_3257-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19656; Mature: 19656

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIEVLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSA
CCHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCC
RWHQSTLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGA
CCCHHHHEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEEEEECCCCH
ALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVDLAGRRVVIADRPGLVTPLPE
HHHHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
DDEH
CCCC
>Mature Secondary Structure
METIEVLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSA
CCHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCC
RWHQSTLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGA
CCCHHHHEEHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEEEEECCCCH
ALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVDLAGRRVVIADRPGLVTPLPE
HHHHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
DDEH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA